# List of top-scoring protein chains for t2k-w0.5-1-CB_burial_14_7-0.3-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1ma3A 253 1.133 c.31.1.5 78883 2i13A 190 1.738 k.12.1.1 136964 2b4yA 271 2.700 c.31.1.5 127868 1yc5A 246 2.798 c.31.1.5 122910 1m2kA 249 3.822 c.31.1.5 84754 1rmdA 116 5.798 g.37.1.1,g.44.1.1 45025,45322 2qgpA 112 6.652 1wiiA 85 15.46 g.41.3.4 114673 1e4uA 78 17.16 g.44.1.1 59231 1b71A 191 18.85 a.25.1.1,g.41.5.1 16647,45246 1uw4A 91 18.92 d.58.7.4 100071 1iciA 256 19.11 c.31.1.5 62266 2rfkB 53 19.26 1q1aA 289 19.86 c.31.1.5 95561 1a1iA 90 21.23 g.37.1.1,g.37.1.1,g.37.1.1 44998,44999,45000 1lkoA 191 21.79 a.25.1.1,g.41.5.1 78063,78064 1ocvA 125 22.94 d.17.4.3 86810 2ctdA 96 23.21 g.37.1.1,g.37.1.1 130792,130793 2cklB 165 24.28 1ryt 190 25.39 1meyC 87 25.69 k.12.1.1 46430 1vqoZ 83 26.76 g.41.8.1 120387 1g2fC 90 26.78 k.12.1.1 60222 2drpA 66 27.13 g.37.1.1,g.37.1.1 45026,45027 2apoB 60 27.20 g.41.16.1 127135 1lv3A 68 28.83 g.39.1.9 78231 2qjoA 341 29.69 2rhkA 140 31.03 2rk5A 87 31.89 1m3vA 122 31.94 g.39.1.3,g.39.1.3 84794,84795 1vk6A 269 32.19 d.113.1.4,d.113.1.4,g.41.14.1 100852,111609,111610 2gx9A 129 33.95 d.299.1.1 135828 2ausB 60 34.60 1we9A 64 36.09 g.50.1.2 114549 1pa4A 116 39.17 d.52.7.1 94409 2pmzP 48 39.24 1aayA 90 39.51 g.37.1.1,g.37.1.1,g.37.1.1 45001,45002,45003 1llmC 88 39.57 g.37.1.1,g.37.1.1 91059,91060 1twfI 122 40.63 g.41.3.1,g.41.3.1 112733,112734 2puyA 60 42.83 1zaaC 87 43.91 g.37.1.1,g.37.1.1,g.37.1.1 45013,45014,45015 9atcB 146 44.11 d.58.2.1,g.41.7.1 39057,45309 1ffkW 73 44.94 g.41.8.1 45315 1j8fA 323 47.79 c.31.1.5 62738 1a7iA 81 49.12 g.39.1.3,g.39.1.3 45143,45144 1m48A 133 49.16 a.26.1.2 74443 2diiA 61 51.31 a.240.1.1 131530 1a1gA 90 51.45 g.37.1.1,g.37.1.1,g.37.1.1 45010,45011,45012 1d09B 153 55.75 d.58.2.1,g.41.7.1 39015,45267 1rmd 116 59.78 1g47A 77 64.71 g.39.1.3,g.39.1.3 45147,45148 1ayzA 169 65.10 d.20.1.1 38326 1fp0A 88 70.69 g.50.1.2 45361 1e0bA 68 73.51 b.34.13.2 37476 2dulA 378 74.29 1hk8A 605 75.51 c.7.1.3 83540 2airB 153 76.77 d.58.2.1,g.41.7.1 126832,126833 2e6rA 92 76.97 2dpmA 284 77.62 c.66.1.28 34246 1a1hA 90 78.28 g.37.1.1,g.37.1.1,g.37.1.1 45004,45005,45006 1cxxA 113 79.11 g.39.1.3,g.39.1.3 45139,45140 1l8dA 112 79.73 h.4.12.1 73687 1jj2Y 73 80.35 g.41.8.1 63110 1z6uA 150 82.90 2b8tA 223 86.44 c.37.1.24,g.39.1.14 128109,128110 2d9rA 104 87.70 b.129.2.1 131350