# List of top-scoring protein chains for t2k-w0.5-1-CB8-sep9-0.3-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2i13A 190 0.4347 k.12.1.1 136964 1ma3A 253 1.103 c.31.1.5 78883 2ctdA 96 4.063 g.37.1.1,g.37.1.1 130792,130793 2qgpA 112 4.698 1we9A 64 5.168 g.50.1.2 114549 1meyC 87 5.369 k.12.1.1 46430 1m2kA 249 5.903 c.31.1.5 84754 1yc5A 246 6.101 c.31.1.5 122910 1ocvA 125 7.687 d.17.4.3 86810 2b4yA 271 7.713 c.31.1.5 127868 1a1iA 90 8.289 g.37.1.1,g.37.1.1,g.37.1.1 44998,44999,45000 2drpA 66 8.641 g.37.1.1,g.37.1.1 45026,45027 1lv3A 68 10.38 g.39.1.9 78231 1omwA 689 10.52 a.91.1.1,b.55.1.1,d.144.1.7 87086,87087,87088 1ffkW 73 10.65 g.41.8.1 45315 1g2fC 90 11.01 k.12.1.1 60222 1rmdA 116 11.20 g.37.1.1,g.44.1.1 45025,45322 1a1gA 90 12.30 g.37.1.1,g.37.1.1,g.37.1.1 45010,45011,45012 1jj2Y 73 13.04 g.41.8.1 63110 1aayA 90 13.85 g.37.1.1,g.37.1.1,g.37.1.1 45001,45002,45003 1vqoZ 83 14.27 g.41.8.1 120387 1llmC 88 15.57 g.37.1.1,g.37.1.1 91059,91060 1ryt 190 15.88 1zaaC 87 17.41 g.37.1.1,g.37.1.1,g.37.1.1 45013,45014,45015 1ubdC 124 19.06 g.37.1.1,g.37.1.1,g.37.1.1,g.37.1.1 45053,45054,45055,45056 2rfkB 53 20.30 1a1hA 90 20.55 g.37.1.1,g.37.1.1,g.37.1.1 45004,45005,45006 2ausB 60 22.81 2cklB 165 25.89 1wiiA 85 26.16 g.41.3.4 114673 1wjvA 79 26.46 g.37.1.2,g.37.1.2 114713,114714 1lkoA 191 27.50 a.25.1.1,g.41.5.1 78063,78064 2apoB 60 29.05 g.41.16.1 127135 1twfI 122 30.38 g.41.3.1,g.41.3.1 112733,112734 2ctuA 73 32.43 1s72Z 73 33.56 g.41.8.1 105345 1g47A 77 34.60 g.39.1.3,g.39.1.3 45147,45148 1rmd 116 34.64 1iciA 256 36.27 c.31.1.5 62266 1q1aA 289 37.82 c.31.1.5 95561 2rhkA 140 42.12 2rk5A 87 43.52 3cngA 189 43.70 2gx9A 129 45.36 d.299.1.1 135828 2eloA 37 45.82 1k81A 36 46.11 g.59.1.1 72136 1srkA 35 47.66 g.37.1.1 105966 2dmiA 115 50.19 2j6aA 141 51.21 1dx8A 70 52.59 g.41.5.1 45243 1a7iA 81 55.81 g.39.1.3,g.39.1.3 45143,45144 1e0bA 68 56.58 b.34.13.2 37476 2pmzP 48 57.00 1tq6A 413 60.46 c.37.1.8 107202 1c4zD 154 61.02 d.20.1.1 38331 2hjhA 354 62.09 1j8fA 323 63.70 c.31.1.5 62738 2e6rA 92 65.12 1ayzA 169 65.62 d.20.1.1 38326 1vk6A 269 66.09 d.113.1.4,d.113.1.4,g.41.14.1 100852,111609,111610 1m3vA 122 68.68 g.39.1.3,g.39.1.3 84794,84795 1iroA 54 69.85 g.41.5.1 45223 2qjoA 341 72.25 2dulA 378 72.77 1fzyA 149 75.10 d.20.1.1 65072 2gagD 99 76.25 2qenA 350 77.72 1yk4A 52 77.90 1cxxA 113 80.22 g.39.1.3,g.39.1.3 45139,45140 2d9rA 104 81.61 b.129.2.1 131350 1qjtA 99 82.50 a.39.1.6 17335 1wjpA 107 83.53 g.37.1.1,g.37.1.1,g.37.1.1 114705,114706,114707 1l8dA 112 86.35 h.4.12.1 73687 1iazA 179 87.24 b.97.1.1 62131 2gliA 160 88.46 g.37.1.1,g.37.1.1,g.37.1.1,g.37.1.1,g.37.1.1 45041,45042,45043,45044,45045 1buqA 125 89.04 d.17.4.3 38111