# List of top-scoring protein chains for t2k-80-60-80-str2+near-backbone-11-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1jr5A 90 2.022 a.150.1.1 67113 1n81A 186 2.317 a.185.1.1 85388 1vzyA 291 4.673 d.193.1.1,g.81.1.1 114042,114043 2gwmA 200 4.775 2i0xA 85 6.726 2qhbA 86 11.03 1lm5A 214 12.25 d.211.2.1 74029 1gk1B 522 13.37 1yc5A 246 15.12 c.31.1.5 122910 2i13A 190 15.25 k.12.1.1 136964 1vq0A 302 15.40 d.193.1.1,g.81.1.1 114000,114001 1tuhA 156 15.66 d.17.4.11 107345 1konA 249 16.63 e.39.1.1 72823 1mw5A 187 17.15 d.259.1.1 91477 2aaoA 166 18.79 4blmA 265 19.24 e.3.1.1 42721 1ru8A 232 19.61 c.26.2.1 97849 1y1xA 191 22.70 a.39.1.8 116374 1i2aA 219 23.05 e.24.1.1 90660 2qenA 350 23.91 2bh9A 489 24.78 1fm2B 520 25.71 2qh9A 184 26.77 2qebA 145 27.42 1cf7B 95 28.74 a.4.5.17 16152 2d13A 227 29.35 c.26.2.1 131121 2dkyA 91 30.12 2cs2A 134 30.42 1or0B 528 31.97 1np8A 159 32.46 a.39.1.8 92022 1yh3A 256 33.95 2qmlA 198 34.10 1lddA 74 34.24 a.4.5.34 73841 1cukA 203 34.24 a.5.1.1,a.60.2.1,b.40.4.2 16273,17946,25265 1vrmA 325 34.96 d.96.2.1 120472 1ck7A 631 34.96 b.66.1.1,g.14.1.2,g.14.1.2,g.14.1.2,a.20.1.2,d.92.1.11 27538,44674,44675,44676,58969,58970 2i66A 262 37.24 2q4pA 170 37.65 1t95A 240 37.97 a.5.8.1,d.235.1.2,d.58.11.3 106705,106706,106707 2v1xA 591 41.29 1j5sA 463 42.08 c.1.9.8 71580 2d9kA 75 42.34 1cnoA 87 43.07 a.3.1.1 15814 1fmcA 255 43.21 c.2.1.2 29856 2gh1A 301 45.47 c.66.1.49 135170 1dlwA 116 45.63 a.1.1.1 14982 2hs5A 239 46.32 1aj5A 173 47.40 a.39.1.8 17367 1x19A 359 49.60 2a15A 139 50.37 d.17.4.3 125973 1c3cA 429 50.85 a.127.1.1 19425 1j1iA 296 54.07 c.69.1.10 83977 1pvaA 110 54.23 a.39.1.4 17207 1alvA 173 54.40 a.39.1.8 17370 2h6fB 437 54.55 a.102.4.3 136186 3bjoA 103 54.84 1x2iA 75 55.05 a.60.2.5 121641 2dxeA 160 56.37 d.58.6.1 131870 3bd1A 79 58.44 1mzhA 225 59.14 c.1.10.1 79698 1fmk 452 59.28 1whxA 111 59.41 d.58.7.1 114654 1g71A 347 59.90 d.264.1.1 43268 1b4aA 149 61.20 a.4.5.3,d.74.2.1 16088,39721 1ytaA 180 62.58 c.55.3.5 124002 2rg4A 216 64.64 1kk8B 139 65.05 a.39.1.5 77430 2ckxA 83 65.35 1v33A 366 65.38 d.264.1.1 100278 1y5iB 512 65.83 d.58.1.5 122641 2bl0C 142 66.38 5palA 109 66.50 a.39.1.4 17215 2oieA 111 67.23 a.204.1.2 139092 2cjgA 449 69.34 2dkzA 84 70.40 2ekcA 262 70.71 2vglA 621 71.09 2j4oA 401 71.98 1thg 544 72.85 1vqzA 341 73.61 d.224.1.3,d.104.1.3 120426,120427 1cy5A 97 73.85 a.77.1.3 18430 2pvbA 107 74.25 a.39.1.4 17205 2doaA 104 74.32 2qgpA 112 74.56 3bs3A 76 74.65 1v54D 147 75.88 f.23.1.1 100325 2qkmB 266 76.06 2f3nA 76 78.56 a.60.1.2 132885 2yruA 118 79.77 1wsuA 124 79.84 a.4.5.35,a.4.5.35 121245,121246 1qksA 567 80.63 a.3.1.2,b.70.2.1 15951,27710 1vraA 208 81.48 2hc5A 117 81.72 1zpwX 90 81.81 d.58.58.1 125478 2q0zX 339 82.57 2c9eA 327 82.68 1q8dA 108 84.91 a.228.1.1 104554 2blfB 81 85.84 1jh6A 189 86.50 d.61.1.1 66707 2nqoA 376 86.52 d.153.1.6 138473 2h9uA 102 86.62 1a1hA 90 88.23 g.37.1.1,g.37.1.1,g.37.1.1 45004,45005,45006 1qwgA 251 88.69 c.1.27.1 96473