Best Alignments for TR476

To select the top models, SAM generates pairwise alignments of the target sequence and the best-scoring templates. The alignments with the best E-values are presented here.

Warning: E-values smaller than about 0.001 may be overly optimistic.

Template	Template E-value	A2M alignment	SCOP Domain(s)
1yc5A	2.6715e+00	1yc5A/TR476-1yc5A-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	c.31.1.5
1q1aA	4.3142e+00	1q1aA/TR476-1q1aA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	c.31.1.5
1j8fA	5.0832e+00	1j8fA/TR476-1j8fA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	c.31.1.5
2ctdA	5.9814e+00	2ctdA/TR476-2ctdA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	g.37.1.1 g.37.1.1
1l8dA	6.2568e+00	1l8dA/TR476-1l8dA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	h.4.12.1
1ma3A	6.2854e+00	1ma3A/TR476-1ma3A-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	c.31.1.5
2drpA	7.0017e+00	2drpA/TR476-2drpA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	g.37.1.1 g.37.1.1
1rmdA	7.9702e+00	1rmdA/TR476-1rmdA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	g.37.1.1 g.44.1.1
1lv3A	8.7875e+00	1lv3A/TR476-1lv3A-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	g.39.1.9
2i13A	9.9985e+00	2i13A/TR476-2i13A-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	k.12.1.1
1a1hA	1.7859e+01	1a1hA/TR476-1a1hA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	g.37.1.1 g.37.1.1 g.37.1.1
2gx9A	1.8517e+01	2gx9A/TR476-2gx9A-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	d.299.1.1
1a1gA	1.9116e+01	1a1gA/TR476-1a1gA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	g.37.1.1 g.37.1.1 g.37.1.1
1yuiA	2.0463e+01	1yuiA/TR476-1yuiA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	g.37.1.1
1vk6A	2.4334e+01	1vk6A/TR476-1vk6A-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	d.113.1.4 d.113.1.4 g.41.14.1
1a1iA	2.4537e+01	1a1iA/TR476-1a1iA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	g.37.1.1 g.37.1.1 g.37.1.1
2rhkA	2.6283e+01	2rhkA/TR476-2rhkA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
1llmC	2.9642e+01	1llmC/TR476-1llmC-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	g.37.1.1 g.37.1.1
2qkdA	3.1090e+01	2qkdA/TR476-2qkdA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
2eloA	3.3149e+01	2eloA/TR476-2eloA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m

Please cite: Karplus, K. and Karchin, R. and Barrett, C. and Tu, S. and Cline, M. and Diekhans, M. and Grate, L. and Casper, J. and Hughey, R. ``What is the value added by human intervention in protein structure prediction?'' Proteins: Structure Function and Genetics 45(S5):86-91,2001