# TARGET TR476 # Using neural net dunbrack-40pc-3157-t06-IDGaaH13-3-13-7-13-9-13-11-n_sep-seeded.net # This is a 4-layer network, with # window units # 3 13 # 7 13 # 9 13 # 11 20 (1 n_sep ) # The input amino acid frequencies were determined from # alignment TR476.t06-thin90.a2m.gz # with weighted counts, using HenikoffWeight(1.3 bits/column, 1) # The weighting was determined by the posterior distribution # after regularizing with /projects/compbio/lib/recode3.20comp. # Counts were regularized to probabilities using # /projects/compbio/lib/recode3.20comp # Total sequence weight for alignment was 2.29899 # Pos AA G H I J K L M N P Q R S T U V W A B C D 10N 1S 5N 5N 5N 5N 5N 5N 5N 5N 5N 5N 5N 5N 5N 5N 5N 5N 5N 5N 5N 5N 1 A 0.089 0.009 0.006 0.002 0.002 0.002 0.002 0.002 0.001 0.001 0.001 0.002 0.002 0.003 0.003 0.002 0.177 0.011 0.095 0.589 2 K 0.028 0.005 0.003 0.001 0.002 0.001 0.002 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.114 0.007 0.068 0.760 3 C 0.058 0.006 0.004 0.002 0.009 0.004 0.005 0.004 0.004 0.002 0.024 0.005 0.009 0.012 0.008 0.008 0.089 0.006 0.120 0.621 4 P 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.004 0.001 0.002 0.992 5 I 0.020 0.005 0.002 0.001 0.003 0.002 0.003 0.002 0.017 0.002 0.002 0.002 0.003 0.003 0.004 0.002 0.135 0.005 0.176 0.612 6 C 0.106 0.020 0.001 0.001 0.001 0.001 0.001 0.001 0.004 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.202 0.009 0.067 0.580 7 G 0.154 0.012 0.002 0.001 0.001 0.001 0.001 0.001 0.002 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.132 0.015 0.052 0.625 8 S 0.136 0.004 0.023 0.001 0.002 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.036 0.007 0.307 0.476 9 P 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.007 0.001 0.004 0.987 10 L 0.072 0.010 0.008 0.002 0.023 0.013 0.005 0.003 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.091 0.014 0.298 0.459 11 K 0.130 0.018 0.005 0.001 0.002 0.002 0.002 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.027 0.006 0.226 0.580 12 W 0.114 0.067 0.004 0.001 0.002 0.002 0.002 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.095 0.003 0.070 0.638 13 E 0.006 0.083 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.018 0.001 0.176 0.714 14 E 0.021 0.062 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.002 0.003 0.614 0.296 15 L 0.009 0.862 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.009 0.118 16 I 0.008 0.962 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.002 0.001 0.003 0.024 17 E 0.006 0.965 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.002 0.025 18 E 0.011 0.959 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.009 0.001 0.019 19 M 0.024 0.957 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.009 0.001 0.008 20 L 0.018 0.958 0.003 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.003 0.005 0.002 0.011 21 I 0.024 0.840 0.042 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.005 0.020 0.011 0.059 22 I 0.109 0.705 0.010 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.008 0.040 0.007 0.120 23 E 0.127 0.577 0.010 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.011 0.036 0.013 0.225 24 N 0.087 0.300 0.094 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.013 0.029 0.075 0.400 25 F 0.079 0.284 0.056 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.046 0.013 0.067 0.453 26 E 0.015 0.196 0.003 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.027 0.004 0.189 0.565 27 E 0.060 0.260 0.007 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.010 0.013 0.223 0.427 28 I 0.048 0.871 0.003 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.004 0.004 0.005 0.064 29 V 0.051 0.884 0.002 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.014 0.004 0.006 0.038 30 K 0.044 0.800 0.004 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.010 0.013 0.010 0.117 31 D 0.073 0.688 0.006 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.010 0.044 0.006 0.171 32 R 0.091 0.529 0.010 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.016 0.032 0.030 0.291 33 E 0.017 0.246 0.019 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.007 0.014 0.290 0.407 34 R 0.059 0.270 0.013 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.004 0.033 0.330 0.289 35 F 0.055 0.796 0.007 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.004 0.005 0.015 0.117 36 L 0.029 0.812 0.007 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.009 0.005 0.019 0.117 37 A 0.032 0.815 0.003 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.007 0.009 0.012 0.120 38 Q 0.069 0.777 0.003 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.006 0.023 0.007 0.114 39 V 0.057 0.840 0.004 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.017 0.014 0.005 0.062 40 E 0.034 0.740 0.008 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.063 0.013 0.023 0.118 41 E 0.072 0.482 0.019 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.080 0.059 0.042 0.242 42 F 0.341 0.308 0.022 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.103 0.064 0.014 0.142 43 V 0.091 0.199 0.047 0.002 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.002 0.005 0.003 0.001 0.293 0.021 0.037 0.293 44 F 0.019 0.073 0.032 0.004 0.004 0.001 0.004 0.002 0.002 0.001 0.001 0.002 0.007 0.017 0.013 0.004 0.498 0.013 0.030 0.275 45 K 0.023 0.033 0.012 0.001 0.001 0.002 0.003 0.001 0.004 0.002 0.003 0.001 0.003 0.004 0.003 0.003 0.410 0.011 0.058 0.421 46 C 0.029 0.016 0.003 0.001 0.001 0.001 0.001 0.001 0.013 0.005 0.026 0.004 0.006 0.008 0.008 0.006 0.170 0.006 0.072 0.626 47 P 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.007 0.001 0.003 0.987 48 V 0.028 0.008 0.002 0.001 0.001 0.001 0.001 0.001 0.010 0.002 0.003 0.001 0.002 0.001 0.002 0.001 0.107 0.009 0.190 0.634 49 C 0.135 0.018 0.001 0.001 0.001 0.001 0.001 0.001 0.002 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.128 0.017 0.084 0.611 50 G 0.178 0.038 0.003 0.001 0.004 0.001 0.001 0.001 0.002 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.130 0.020 0.085 0.532 51 E 0.181 0.020 0.014 0.001 0.005 0.002 0.001 0.002 0.001 0.001 0.002 0.001 0.003 0.004 0.002 0.002 0.064 0.020 0.136 0.538 52 E 0.037 0.034 0.003 0.001 0.001 0.004 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.136 0.007 0.095 0.674 53 F 0.147 0.111 0.014 0.003 0.022 0.012 0.007 0.004 0.018 0.004 0.003 0.002 0.005 0.004 0.003 0.003 0.160 0.041 0.096 0.345 54 Y 0.056 0.102 0.004 0.001 0.003 0.002 0.004 0.002 0.002 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.301 0.010 0.054 0.454 55 G 0.054 0.038 0.006 0.001 0.002 0.001 0.003 0.002 0.004 0.001 0.001 0.001 0.001 0.001 0.001 0.002 0.243 0.024 0.070 0.545 56 K 0.264 0.025 0.029 0.001 0.001 0.001 0.001 0.002 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.143 0.019 0.117 0.393 57 T 0.042 0.027 0.008 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.099 0.010 0.116 0.693 58 L 0.137 0.033 0.012 0.002 0.017 0.005 0.004 0.003 0.002 0.001 0.002 0.001 0.001 0.001 0.001 0.002 0.256 0.019 0.134 0.366 59 P 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.002 0.001 0.007 0.989 60 R 0.016 0.010 0.002 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.119 0.003 0.114 0.729 61 R 0.032 0.041 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.018 0.002 0.161 0.744 62 E 0.183 0.067 0.002 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.017 0.005 0.140 0.583 63 A 0.070 0.546 0.002 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.018 0.004 0.080 0.280 64 E 0.052 0.764 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.023 0.005 0.033 0.121 65 K 0.017 0.863 0.002 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.016 0.007 0.016 0.078 66 V 0.011 0.913 0.005 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.007 0.004 0.003 0.057 67 F 0.006 0.964 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.013 0.002 0.001 0.013 68 E 0.010 0.964 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.010 0.002 0.002 0.011 69 L 0.019 0.935 0.002 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.008 0.010 0.003 0.023 70 L 0.029 0.930 0.002 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.008 0.013 0.002 0.016 71 N 0.148 0.642 0.005 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.013 0.085 0.006 0.097 72 D 0.205 0.203 0.160 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.023 0.101 0.033 0.270 73 F 0.242 0.122 0.064 0.004 0.001 0.001 0.001 0.001 0.002 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.080 0.046 0.131 0.308 74 K 0.086 0.048 0.024 0.004 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.140 0.022 0.191 0.480 75 G 0.055 0.029 0.014 0.007 0.005 0.002 0.004 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.002 0.001 0.165 0.023 0.144 0.546 76 G 0.409 0.013 0.038 0.006 0.002 0.003 0.004 0.004 0.001 0.001 0.001 0.001 0.003 0.008 0.019 0.007 0.087 0.022 0.099 0.274 77 I 0.032 0.016 0.008 0.004 0.001 0.001 0.003 0.002 0.001 0.001 0.007 0.002 0.020 0.012 0.004 0.002 0.235 0.004 0.114 0.533 78 D 0.022 0.008 0.003 0.002 0.003 0.001 0.003 0.002 0.008 0.099 0.199 0.004 0.017 0.004 0.002 0.002 0.057 0.005 0.187 0.371 79 W 0.019 0.009 0.001 0.001 0.001 0.001 0.001 0.001 0.045 0.013 0.003 0.001 0.001 0.001 0.001 0.001 0.182 0.002 0.103 0.618 80 E 0.002 0.010 0.001 0.001 0.001 0.001 0.001 0.001 0.008 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.020 0.001 0.854 0.105 81 N 0.271 0.020 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.044 0.282 0.334 0.046 82 K 0.593 0.106 0.084 0.002 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.023 0.053 0.044 0.094 83 R 0.026 0.020 0.100 0.007 0.006 0.002 0.001 0.002 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.272 0.012 0.238 0.313 84 V 0.007 0.010 0.007 0.005 0.028 0.060 0.022 0.006 0.001 0.001 0.001 0.001 0.001 0.003 0.004 0.003 0.558 0.006 0.037 0.244 85 K 0.005 0.006 0.002 0.002 0.023 0.032 0.330 0.011 0.001 0.001 0.001 0.001 0.003 0.007 0.009 0.008 0.399 0.003 0.036 0.120 86 L 0.005 0.007 0.002 0.002 0.001 0.001 0.017 0.008 0.005 0.002 0.001 0.001 0.005 0.008 0.015 0.013 0.519 0.002 0.029 0.355 87 K 0.004 0.006 0.001 0.001 0.001 0.001 0.001 0.002 0.003 0.002 0.002 0.001 0.003 0.004 0.003 0.002 0.753 0.002 0.043 0.166