# List of top-scoring protein chains for t06-w0.5-1-str4-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
1yc5A	246	2.333	c.31.1.5	122910
1q1aA	289	2.365	c.31.1.5	95561
1j8fA	323	2.609	c.31.1.5	62738
1rmdA	116	7.726	g.37.1.1,g.44.1.1	45025,45322
1ma3A	253	9.219	c.31.1.5	78883
1l8dA	112	9.415	h.4.12.1	73687
2ctdA	96	9.871	g.37.1.1,g.37.1.1	130792,130793
1lv3A	68	12.36	g.39.1.9	78231
1tq4A	413	13.78	c.37.1.8	107201
1vk6A	269	18.99	d.113.1.4,d.113.1.4,g.41.14.1	100852,111609,111610
2drpA	66	19.93	g.37.1.1,g.37.1.1	45026,45027
2gx9A	129	29.21	d.299.1.1	135828
1yuiA	54	30.20	g.37.1.1	45073
1h2iA	209	31.00	d.50.1.3	76550
1c3cA	429	32.14	a.127.1.1	19425
2cveA	191	34.31	d.14.1.11,d.58.11.2	130869,130870
1vqtA	213	34.72	c.1.2.3	120417
2hjhA	354	37.13		
2qkdA	404	38.84		
2i13A	190	39.50	k.12.1.1	136964
1m2kA	249	40.12	c.31.1.5	84754
2pmzP	48	41.27		
2rhkA	140	41.66		
1uu1A	335	44.12	c.67.1.1	99993
3cwfA	122	44.38		
1a7iA	81	44.83	g.39.1.3,g.39.1.3	45143,45144
2b9dA	52	51.09		
2eloA	37	51.80		
1x31D	99	57.16		
2g5gX	268	57.67		
2c1dA	264	58.36		
2hnhA	910	59.04		
2z2mA	168	61.12		
1hk8A	605	62.88	c.7.1.3	83540
2d9kA	75	63.89		
1a1hA	90	64.84	g.37.1.1,g.37.1.1,g.37.1.1	45004,45005,45006
1vqoZ	83	66.76	g.41.8.1	120387
2jrpA	81	67.77		
1oksA	56	67.90	a.8.5.1	93271
1rmd	116	68.37		
1miwA	404	69.36	a.173.1.1,d.218.1.4	79162,79163
2b4yA	271	70.07	c.31.1.5	127868
1a1gA	90	72.30	g.37.1.1,g.37.1.1,g.37.1.1	45010,45011,45012
1w24A	182	72.56	d.159.1.7	120579
1zsoA	164	73.89	b.166.1.1	125610
1x8hA	228	74.55	d.157.1.1	114961
1x8gA	227	75.20	d.157.1.1	114960
2gagD	99	75.46		
1qxfA	66	76.67	g.41.8.4	96527
2f42A	179	84.43		
1yfuA	174	86.54	b.82.1.20	123094
1n8kA	374	86.73	b.35.1.2,c.2.1.1	80298,80299
2hu9A	130	86.83		
3bxuA	71	88.41		
2apoB	60	88.55	g.41.16.1	127135
1a1iA	90	88.90	g.37.1.1,g.37.1.1,g.37.1.1	44998,44999,45000