# List of top-scoring protein chains for t06-w0.5-1-str2-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
1q1aA	289	1.834	c.31.1.5	95561
1yc5A	246	2.415	c.31.1.5	122910
1j8fA	323	3.010	c.31.1.5	62738
1rmdA	116	6.752	g.37.1.1,g.44.1.1	45025,45322
1l8dA	112	6.853	h.4.12.1	73687
2ctdA	96	7.977	g.37.1.1,g.37.1.1	130792,130793
1ma3A	253	8.294	c.31.1.5	78883
1lv3A	68	10.01	g.39.1.9	78231
2drpA	66	13.88	g.37.1.1,g.37.1.1	45026,45027
1vk6A	269	14.96	d.113.1.4,d.113.1.4,g.41.14.1	100852,111609,111610
1vqtA	213	16.75	c.1.2.3	120417
1tq4A	413	18.92	c.37.1.8	107201
2gx9A	129	19.44	d.299.1.1	135828
2cveA	191	22.38	d.14.1.11,d.58.11.2	130869,130870
2i13A	190	23.38	k.12.1.1	136964
1yuiA	54	25.15	g.37.1.1	45073
2d9kA	75	26.66		
1rutX	188	26.90	g.39.1.3,g.39.1.3,g.39.1.3,g.39.1.3	111939,111940,111941,111942
2rhkA	140	28.56		
1vqoZ	83	31.46	g.41.8.1	120387
1a1hA	90	36.68	g.37.1.1,g.37.1.1,g.37.1.1	45004,45005,45006
1hk8A	605	38.64	c.7.1.3	83540
1a1gA	90	38.84	g.37.1.1,g.37.1.1,g.37.1.1	45010,45011,45012
1c3cA	429	40.59	a.127.1.1	19425
2hjhA	354	41.65		
2eloA	37	42.05		
1a1iA	90	44.17	g.37.1.1,g.37.1.1,g.37.1.1	44998,44999,45000
3cwfA	122	45.30		
2gnrA	145	45.52		
2pmzP	48	46.73		
2qkdA	404	46.93		
1m2kA	249	47.65	c.31.1.5	84754
1uu1A	335	50.08	c.67.1.1	99993
2jrpA	81	51.06		
1qxfA	66	51.93	g.41.8.4	96527
1llmC	88	52.05	g.37.1.1,g.37.1.1	91059,91060
2b9dA	52	52.80		
2z2mA	168	54.79		
3cngA	189	58.27		
1rmd	116	60.36		
1x31D	99	61.09		
1yfuA	174	62.89	b.82.1.20	123094
1wjpA	107	63.67	g.37.1.1,g.37.1.1,g.37.1.1	114705,114706,114707
2gmgA	105	67.92		
1wjvA	79	70.75	g.37.1.2,g.37.1.2	114713,114714
1h2iA	209	72.69	d.50.1.3	76550
2g5gX	268	73.74		
1zsoA	164	74.29	b.166.1.1	125610
2hu9A	130	80.68		
1a7iA	81	82.22	g.39.1.3,g.39.1.3	45143,45144
2f42A	179	82.32		
2j6aA	141	85.29		
2hnhA	910	86.03		
2gagD	99	86.87		
2ct0A	74	87.44