# List of top-scoring protein chains for t06-w0.5-1-pb-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1yc5A 246 0.4174 c.31.1.5 122910 1q1aA 289 0.4293 c.31.1.5 95561 1j8fA 323 0.9795 c.31.1.5 62738 1ma3A 253 1.342 c.31.1.5 78883 1rmdA 116 2.743 g.37.1.1,g.44.1.1 45025,45322 2ctdA 96 4.047 g.37.1.1,g.37.1.1 130792,130793 2drpA 66 4.327 g.37.1.1,g.37.1.1 45026,45027 1lv3A 68 8.055 g.39.1.9 78231 2d9kA 75 8.423 1tq4A 413 9.898 c.37.1.8 107201 1wjvA 79 10.88 g.37.1.2,g.37.1.2 114713,114714 1l8dA 112 11.25 h.4.12.1 73687 2i13A 190 12.81 k.12.1.1 136964 1yuiA 54 17.16 g.37.1.1 45073 1vk6A 269 17.33 d.113.1.4,d.113.1.4,g.41.14.1 100852,111609,111610 2hjhA 354 17.54 2cveA 191 18.29 d.14.1.11,d.58.11.2 130869,130870 1a1hA 90 18.30 g.37.1.1,g.37.1.1,g.37.1.1 45004,45005,45006 1a1gA 90 19.13 g.37.1.1,g.37.1.1,g.37.1.1 45010,45011,45012 1rutX 188 21.68 g.39.1.3,g.39.1.3,g.39.1.3,g.39.1.3 111939,111940,111941,111942 1wjpA 107 22.82 g.37.1.1,g.37.1.1,g.37.1.1 114705,114706,114707 1a1iA 90 23.67 g.37.1.1,g.37.1.1,g.37.1.1 44998,44999,45000 2eloA 37 28.48 2ct0A 74 30.87 2b9dA 52 31.93 1rmd 116 33.69 1exrA 148 34.71 a.39.1.5 17299 1m2kA 249 35.76 c.31.1.5 84754 1hk8A 605 35.78 c.7.1.3 83540 1ggzA 148 36.51 a.39.1.5 70176 1qxfA 66 38.65 g.41.8.4 96527 1llmC 88 39.09 g.37.1.1,g.37.1.1 91059,91060 1x31D 99 41.49 2f3yA 148 41.75 1we9A 64 43.34 g.50.1.2 114549 2qkdA 404 46.98 3cngA 189 47.24 1vzyA 291 48.73 d.193.1.1,g.81.1.1 114042,114043 1c3cA 429 48.86 a.127.1.1 19425 2gagD 99 49.05 2hu9A 130 52.93 2o5gA 148 53.25 2gmgA 105 53.44 2ctuA 73 55.10 1vqoZ 83 58.21 g.41.8.1 120387 2bl0C 142 58.60 2aaoA 166 60.07 2hnhA 910 60.58 2obhA 143 60.94 1w24A 182 61.10 d.159.1.7 120579 2o1rA 81 61.66 1tq6A 413 61.72 c.37.1.8 107202 2j6aA 141 61.93 1oksA 56 64.57 a.8.5.1 93271 1ptq 50 64.89 1wdcC 156 64.94 a.39.1.5 17317 1a7iA 81 66.35 g.39.1.3,g.39.1.3 45143,45144 2b4yA 271 66.59 c.31.1.5 127868 1dxgA 36 68.38 g.41.5.2 45247 2f42A 179 68.66 2gx9A 129 68.75 d.299.1.1 135828 2apoB 60 70.71 g.41.16.1 127135 2rhkA 140 71.63 2a14A 263 72.22 c.66.1.15 125972 1twfI 122 74.04 g.41.3.1,g.41.3.1 112733,112734 1ghpA 258 74.09 e.3.1.1 60520 1yljA 263 74.43 1x8hA 228 77.70 d.157.1.1 114961 6rxnA 45 78.22 g.41.5.1 45222 1t8kA 77 78.31 a.28.1.1 106666 2ehsA 77 79.48 1a2xA 159 79.87 a.39.1.5 17251 2jrpA 81 80.99 1furA 467 81.41 a.127.1.1 19403 2vpbA 65 84.30 1vqtA 213 84.30 c.1.2.3 120417 2z2mA 168 84.48 1v60A 123 87.37 1yfuA 174 87.89 b.82.1.20 123094 1ptqA 50 88.12 g.49.1.1 45349 1wfeA 86 88.81 g.80.1.1 114579