# List of top-scoring protein chains for t06-w0.5-1-o_sep-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
1yc5A	246	2.428	c.31.1.5	122910
1q1aA	289	3.214	c.31.1.5	95561
1j8fA	323	5.945	c.31.1.5	62738
1l8dA	112	7.140	h.4.12.1	73687
1ma3A	253	9.015	c.31.1.5	78883
2ctdA	96	10.19	g.37.1.1,g.37.1.1	130792,130793
2gx9A	129	10.22	d.299.1.1	135828
2cveA	191	11.11	d.14.1.11,d.58.11.2	130869,130870
1lv3A	68	12.51	g.39.1.9	78231
1rmdA	116	13.05	g.37.1.1,g.44.1.1	45025,45322
1vk6A	269	13.96	d.113.1.4,d.113.1.4,g.41.14.1	100852,111609,111610
2drpA	66	18.06	g.37.1.1,g.37.1.1	45026,45027
2qkdA	404	19.93		
1tq4A	413	21.34	c.37.1.8	107201
1vqtA	213	24.65	c.1.2.3	120417
2rhkA	140	25.61		
1yuiA	54	26.84	g.37.1.1	45073
1vqoZ	83	29.90	g.41.8.1	120387
1hk8A	605	31.01	c.7.1.3	83540
1rutX	188	33.00	g.39.1.3,g.39.1.3,g.39.1.3,g.39.1.3	111939,111940,111941,111942
1yfuA	174	33.03	b.82.1.20	123094
2i13A	190	36.90	k.12.1.1	136964
2g5gX	268	39.84		
3cngA	189	42.10		
1uu1A	335	42.69	c.67.1.1	99993
3cwfA	122	43.12		
1m2kA	249	43.15	c.31.1.5	84754
1w24A	182	44.04	d.159.1.7	120579
2pmzP	48	55.11		
1lkoA	191	55.36	a.25.1.1,g.41.5.1	78063,78064
2b4yA	271	56.03	c.31.1.5	127868
2eloA	37	56.22		
1miwA	404	56.92	a.173.1.1,d.218.1.4	79162,79163
2b9dA	52	59.91		
1h2iA	209	60.84	d.50.1.3	76550
1qxfA	66	61.98	g.41.8.4	96527
2ppwA	216	62.03		
1a1hA	90	62.48	g.37.1.1,g.37.1.1,g.37.1.1	45004,45005,45006
1a7iA	81	70.22	g.39.1.3,g.39.1.3	45143,45144
2c1dA	264	70.81		
1c3cA	429	73.30	a.127.1.1	19425
2hjhA	354	74.55		
1a1gA	90	75.87	g.37.1.1,g.37.1.1,g.37.1.1	45010,45011,45012
2q8uA	336	77.88		
2hu9A	130	79.17		
2jrpA	81	79.28		
2gnrA	145	80.27		
1rmd	116	82.26		
2apoB	60	83.07	g.41.16.1	127135
2z2mA	168	83.30		
1x8hA	228	84.18	d.157.1.1	114961
1jx7A	117	85.79	c.114.1.1	77195
1zsoA	164	86.17	b.166.1.1	125610
3bxuA	71	87.48		
1a1iA	90	89.78	g.37.1.1,g.37.1.1,g.37.1.1	44998,44999,45000