# List of top-scoring protein chains for t06-w0.5-1-o_notor2-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
1yc5A	246	3.728	c.31.1.5	122910
1q1aA	289	4.596	c.31.1.5	95561
1j8fA	323	6.959	c.31.1.5	62738
1l8dA	112	8.784	h.4.12.1	73687
2cveA	191	12.04	d.14.1.11,d.58.11.2	130869,130870
1ma3A	253	13.54	c.31.1.5	78883
2gx9A	129	13.81	d.299.1.1	135828
1lv3A	68	16.29	g.39.1.9	78231
1vk6A	269	16.59	d.113.1.4,d.113.1.4,g.41.14.1	100852,111609,111610
1rmdA	116	16.69	g.37.1.1,g.44.1.1	45025,45322
2ctdA	96	18.79	g.37.1.1,g.37.1.1	130792,130793
2rhkA	140	24.41		
2qkdA	404	25.00		
1vqtA	213	25.01	c.1.2.3	120417
1hk8A	605	26.55	c.7.1.3	83540
1tq4A	413	29.09	c.37.1.8	107201
2drpA	66	33.89	g.37.1.1,g.37.1.1	45026,45027
1yuiA	54	37.33	g.37.1.1	45073
1uu1A	335	37.49	c.67.1.1	99993
1yfuA	174	41.43	b.82.1.20	123094
1w24A	182	41.73	d.159.1.7	120579
1miwA	404	42.14	a.173.1.1,d.218.1.4	79162,79163
1h2iA	209	47.38	d.50.1.3	76550
1vqoZ	83	49.46	g.41.8.1	120387
3cwfA	122	52.00		
1jx7A	117	53.61	c.114.1.1	77195
1rutX	188	54.12	g.39.1.3,g.39.1.3,g.39.1.3,g.39.1.3	111939,111940,111941,111942
1m2kA	249	54.31	c.31.1.5	84754
2g5gX	268	56.11		
1lkoA	191	57.37	a.25.1.1,g.41.5.1	78063,78064
1c3cA	429	60.24	a.127.1.1	19425
3cngA	189	60.48		
2eloA	37	61.31		
2pmzP	48	62.47		
2ppwA	216	63.57		
2i13A	190	66.24	k.12.1.1	136964
2q8uA	336	69.55		
1svjA	156	77.04	d.220.1.1	106049
1qxfA	66	82.77	g.41.8.4	96527
3bxuA	71	83.98		
2b9dA	52	85.15		
2b4yA	271	85.41	c.31.1.5	127868
2hjhA	354	86.59		
1x8hA	228	86.60	d.157.1.1	114961
1v60A	123	89.04		
1s68A	249	89.35	d.142.2.4	98591
2jrpA	81	89.52