# List of top-scoring protein chains for t06-w0.5-1-o_notor-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
1yc5A	246	3.074	c.31.1.5	122910
1q1aA	289	5.143	c.31.1.5	95561
1l8dA	112	6.380	h.4.12.1	73687
1j8fA	323	8.052	c.31.1.5	62738
2cveA	191	11.84	d.14.1.11,d.58.11.2	130869,130870
2ctdA	96	12.79	g.37.1.1,g.37.1.1	130792,130793
1ma3A	253	13.52	c.31.1.5	78883
1tq4A	413	16.78	c.37.1.8	107201
1lv3A	68	17.91	g.39.1.9	78231
1vk6A	269	18.04	d.113.1.4,d.113.1.4,g.41.14.1	100852,111609,111610
1vqtA	213	20.39	c.1.2.3	120417
2gx9A	129	20.61	d.299.1.1	135828
1rmdA	116	21.06	g.37.1.1,g.44.1.1	45025,45322
2qkdA	404	23.46		
2drpA	66	27.34	g.37.1.1,g.37.1.1	45026,45027
1h2iA	209	31.59	d.50.1.3	76550
1uu1A	335	34.33	c.67.1.1	99993
1w24A	182	34.88	d.159.1.7	120579
1yuiA	54	38.38	g.37.1.1	45073
1hk8A	605	39.98	c.7.1.3	83540
2rhkA	140	40.90		
2c1dA	264	46.24		
3cwfA	122	48.01		
2g5gX	268	48.36		
1vqoZ	83	48.75	g.41.8.1	120387
1yfuA	174	49.23	b.82.1.20	123094
1jx7A	117	56.08	c.114.1.1	77195
2eloA	37	56.92		
1m2kA	249	57.67	c.31.1.5	84754
2q8uA	336	58.46		
2i13A	190	58.81	k.12.1.1	136964
3cngA	189	59.72		
2pmzP	48	61.24		
1x8hA	228	61.55	d.157.1.1	114961
3bhgA	459	63.21		
1miwA	404	65.23	a.173.1.1,d.218.1.4	79162,79163
1rutX	188	65.91	g.39.1.3,g.39.1.3,g.39.1.3,g.39.1.3	111939,111940,111941,111942
1lkoA	191	66.27	a.25.1.1,g.41.5.1	78063,78064
2ppwA	216	67.57		
1x8gA	227	70.79	d.157.1.1	114960
2ptrA	462	76.25		
1qxfA	66	79.76	g.41.8.4	96527
1yz7A	188	80.15		
1x31D	99	85.85		
3bxuA	71	87.18		
1svjA	156	88.49	d.220.1.1	106049