# List of top-scoring protein chains for t06-w0.5-1-near-backbone-11-0.3-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
1yc5A	246	3.361	c.31.1.5	122910
1q1aA	289	9.485	c.31.1.5	95561
2drpA	66	12.09	g.37.1.1,g.37.1.1	45026,45027
1j8fA	323	13.14	c.31.1.5	62738
1ma3A	253	14.86	c.31.1.5	78883
1rmdA	116	19.29	g.37.1.1,g.44.1.1	45025,45322
2i13A	190	22.17	k.12.1.1	136964
2ctdA	96	24.12	g.37.1.1,g.37.1.1	130792,130793
1vk6A	269	25.26	d.113.1.4,d.113.1.4,g.41.14.1	100852,111609,111610
1lv3A	68	31.51	g.39.1.9	78231
1a1gA	90	33.75	g.37.1.1,g.37.1.1,g.37.1.1	45010,45011,45012
1a1hA	90	35.92	g.37.1.1,g.37.1.1,g.37.1.1	45004,45005,45006
1m2kA	249	46.04	c.31.1.5	84754
2jrpA	81	49.17		
1uu1A	335	59.82	c.67.1.1	99993
1rutX	188	59.90	g.39.1.3,g.39.1.3,g.39.1.3,g.39.1.3	111939,111940,111941,111942
1a1iA	90	60.96	g.37.1.1,g.37.1.1,g.37.1.1	44998,44999,45000
1hk8A	605	65.25	c.7.1.3	83540
1yuiA	54	66.25	g.37.1.1	45073
1wjpA	107	68.22	g.37.1.1,g.37.1.1,g.37.1.1	114705,114706,114707
1lkoA	191	69.43	a.25.1.1,g.41.5.1	78063,78064
1zu1A	127	71.68		
2a0jA	149	73.40		
2eloA	37	77.12		
3cngA	189	78.39		
1fzyA	149	79.41	d.20.1.1	65072
1l8dA	112	79.80	h.4.12.1	73687
1oksA	56	81.47	a.8.5.1	93271
1tq4A	413	82.82	c.37.1.8	107201
2gx9A	129	85.53	d.299.1.1	135828
2j6aA	141	88.18		
2cveA	191	89.93	d.14.1.11,d.58.11.2	130869,130870