# List of top-scoring protein chains for t06-w0.5-1-n_sep-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1yc5A 246 5.884 c.31.1.5 122910 1q1aA 289 7.890 c.31.1.5 95561 1j8fA 323 10.70 c.31.1.5 62738 1tq4A 413 11.84 c.37.1.8 107201 2drpA 66 12.02 g.37.1.1,g.37.1.1 45026,45027 1rmdA 116 13.95 g.37.1.1,g.44.1.1 45025,45322 1l8dA 112 14.09 h.4.12.1 73687 2ctdA 96 15.71 g.37.1.1,g.37.1.1 130792,130793 1lv3A 68 18.62 g.39.1.9 78231 2i13A 190 18.99 k.12.1.1 136964 1vk6A 269 22.14 d.113.1.4,d.113.1.4,g.41.14.1 100852,111609,111610 1ma3A 253 24.28 c.31.1.5 78883 2fiyA 309 27.33 e.59.1.1 133540 1yuiA 54 27.97 g.37.1.1 45073 1a1hA 90 28.46 g.37.1.1,g.37.1.1,g.37.1.1 45004,45005,45006 1a1gA 90 29.95 g.37.1.1,g.37.1.1,g.37.1.1 45010,45011,45012 1llmC 88 31.42 g.37.1.1,g.37.1.1 91059,91060 2qkdA 404 36.25 1a1iA 90 37.24 g.37.1.1,g.37.1.1,g.37.1.1 44998,44999,45000 2gx9A 129 41.04 d.299.1.1 135828 1vqtA 213 41.87 c.1.2.3 120417 1hk8A 605 44.59 c.7.1.3 83540 2pmzP 48 50.11 1vqoZ 83 54.32 g.41.8.1 120387 1yfuA 174 55.25 b.82.1.20 123094 1m2kA 249 56.03 c.31.1.5 84754 2cveA 191 57.94 d.14.1.11,d.58.11.2 130869,130870 2rhkA 140 59.75 1wjpA 107 60.46 g.37.1.1,g.37.1.1,g.37.1.1 114705,114706,114707 2d9kA 75 60.84 2b4yA 271 60.93 c.31.1.5 127868 1tq6A 413 66.02 c.37.1.8 107202 1rutX 188 66.92 g.39.1.3,g.39.1.3,g.39.1.3,g.39.1.3 111939,111940,111941,111942 1rmd 116 70.17 3cngA 189 70.81 1zsoA 164 71.52 b.166.1.1 125610 1wjvA 79 73.66 g.37.1.2,g.37.1.2 114713,114714 2c1dA 264 73.75 2eloA 37 77.50 1qxfA 66 77.64 g.41.8.4 96527 3cwfA 122 82.80 1oksA 56 83.06 a.8.5.1 93271 2hjhA 354 87.04 1c3cA 429 87.74 a.127.1.1 19425