# List of top-scoring protein chains for t06-w0.5-1-n_notor2-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1rmdA 116 1.099 g.37.1.1,g.44.1.1 45025,45322 1q33A 292 1.465 d.113.1.1 95657 1l8dA 112 3.264 h.4.12.1 73687 2ctdA 96 3.322 g.37.1.1,g.37.1.1 130792,130793 2drpA 66 4.853 g.37.1.1,g.37.1.1 45026,45027 1zsoA 164 6.163 b.166.1.1 125610 2zctA 249 6.819 1qoiA 177 8.278 b.62.1.1 27490 1h0pA 182 9.96 b.62.1.1 76450 1lv3A 68 10.02 g.39.1.9 78231 2i7aA 174 10.05 2rmcA 182 10.37 b.62.1.1 27491 2hnhA 910 10.50 2ptrA 462 11.61 1tq4A 413 12.19 c.37.1.8 107201 1q1aA 289 14.21 c.31.1.5 95561 2i13A 190 14.42 k.12.1.1 136964 1w0pA 781 15.22 b.29.1.8,b.29.1.8,b.68.1.1 109038,109039,109040 2qkpA 151 16.83 1ghpA 258 16.98 e.3.1.1 60520 3bhgA 459 17.08 1vk6A 269 18.53 d.113.1.4,d.113.1.4,g.41.14.1 100852,111609,111610 2ob9A 130 18.96 1yuiA 54 19.09 g.37.1.1 45073 2rhkA 140 19.60 3cngA 189 20.59 2pajA 492 20.61 1rutX 188 21.57 g.39.1.3,g.39.1.3,g.39.1.3,g.39.1.3 111939,111940,111941,111942 2gx9A 129 22.96 d.299.1.1 135828 2qgpA 112 24.45 1a1hA 90 24.63 g.37.1.1,g.37.1.1,g.37.1.1 45004,45005,45006 1u8vA 490 25.22 a.29.3.1,e.6.1.1 113196,113197 2d9kA 75 26.03 1r89A 437 26.10 a.160.1.3,d.218.1.7,d.58.16.2 97221,97222,97223 1a1gA 90 26.12 g.37.1.1,g.37.1.1,g.37.1.1 45010,45011,45012 2fiyA 309 27.98 e.59.1.1 133540 1oe4A 247 29.51 c.18.1.3 86895 1llmC 88 29.55 g.37.1.1,g.37.1.1 91059,91060 2e27H 126 31.03 1vqtA 213 31.27 c.1.2.3 120417 2j6aA 141 31.84 2cfeA 162 33.60 b.62.1.1 130375 1ew2A 513 33.93 c.76.1.1 59525 1wjpA 107 35.01 g.37.1.1,g.37.1.1,g.37.1.1 114705,114706,114707 1a6vH 120 35.73 b.1.1.1 20257 1hzoA 271 36.06 e.3.1.1 71092 1rmd 116 36.18 2pmzP 48 38.28 2fqhA 109 40.99 2e84A 556 42.30 1zejA 293 44.00 1yfuA 174 45.44 b.82.1.20 123094 2gmgA 105 45.53 2r99A 173 46.41 1c3cA 429 46.95 a.127.1.1 19425 1z6uA 150 47.02 2hqyA 305 48.68 2z6wA 165 49.80 2cdcA 366 52.20 2eloA 37 53.60 1h2iA 209 54.17 d.50.1.3 76550 1ia6A 441 54.24 a.102.1.2 76738 1sffA 426 54.78 c.67.1.4 105482 1n0xH 230 57.84 b.1.1.1,b.1.1.2 91528,91529 1f7zA 233 58.53 b.47.1.2 59681 2pusA 852 59.35 2cmtA 172 60.77 1ntyA 311 60.92 a.87.1.1,b.55.1.1 103873,103874 1gntA 553 61.01 e.26.1.1 70290 2zadA 345 61.40 2c5kT 95 61.63 1iyeA 309 61.92 e.17.1.1 83786 2qizA 982 64.28 1wjvA 79 64.74 g.37.1.2,g.37.1.2 114713,114714 2gkmA 136 65.62 1n8kA 374 65.89 b.35.1.2,c.2.1.1 80298,80299 1vqoZ 83 66.48 g.41.8.1 120387 1x3lA 440 66.82 2oryA 346 67.80 3ci3A 194 68.09 2jrpA 81 68.11 2fcr 173 68.86 1bhe 376 69.74 1oksA 56 71.03 a.8.5.1 93271 1jb0A 755 72.42 f.29.1.1 62820 2qruA 274 73.33 2riqA 160 73.57 1yozA 116 73.77 a.253.1.1 123796 1vhoA 346 75.87 b.49.3.1,c.56.5.4 100694,100695 1a1iA 90 76.52 g.37.1.1,g.37.1.1,g.37.1.1 44998,44999,45000 2ppvA 332 76.56 1ma3A 253 77.79 c.31.1.5 78883 1a7iA 81 79.50 g.39.1.3,g.39.1.3 45143,45144 2hu9A 130 80.22 1qxfA 66 82.24 g.41.8.4 96527 1eovA 487 85.06 b.40.4.1,d.104.1.1 25239,40760 2z8fA 412 85.57 2f6kA 307 85.90 c.1.9.15 133047