# List of top-scoring protein chains for t06-w0.5-1-n_notor-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
1yc5A	246	7.173	c.31.1.5	122910
1q1aA	289	9.248	c.31.1.5	95561
1j8fA	323	13.82	c.31.1.5	62738
1tq4A	413	14.34	c.37.1.8	107201
1rmdA	116	16.33	g.37.1.1,g.44.1.1	45025,45322
2drpA	66	17.21	g.37.1.1,g.37.1.1	45026,45027
1l8dA	112	18.38	h.4.12.1	73687
2ctdA	96	18.90	g.37.1.1,g.37.1.1	130792,130793
1ma3A	253	21.24	c.31.1.5	78883
1lv3A	68	21.65	g.39.1.9	78231
2i13A	190	27.77	k.12.1.1	136964
1yuiA	54	30.11	g.37.1.1	45073
2gx9A	129	35.44	d.299.1.1	135828
1vk6A	269	35.95	d.113.1.4,d.113.1.4,g.41.14.1	100852,111609,111610
1a1hA	90	39.95	g.37.1.1,g.37.1.1,g.37.1.1	45004,45005,45006
1a1gA	90	42.99	g.37.1.1,g.37.1.1,g.37.1.1	45010,45011,45012
1vqtA	213	46.05	c.1.2.3	120417
2pmzP	48	49.76		
1a1iA	90	53.04	g.37.1.1,g.37.1.1,g.37.1.1	44998,44999,45000
2qkdA	404	53.17		
2fiyA	309	55.26	e.59.1.1	133540
2rhkA	140	56.15		
1rutX	188	56.40	g.39.1.3,g.39.1.3,g.39.1.3,g.39.1.3	111939,111940,111941,111942
1llmC	88	56.63	g.37.1.1,g.37.1.1	91059,91060
1hk8A	605	59.18	c.7.1.3	83540
1wjpA	107	62.67	g.37.1.1,g.37.1.1,g.37.1.1	114705,114706,114707
1m2kA	249	63.73	c.31.1.5	84754
2cveA	191	65.36	d.14.1.11,d.58.11.2	130869,130870
2b4yA	271	66.15	c.31.1.5	127868
1vqoZ	83	68.80	g.41.8.1	120387
1h2iA	209	69.00	d.50.1.3	76550
2d9kA	75	69.62		
2c1dA	264	72.44		
1yfuA	174	72.47	b.82.1.20	123094
1rmd	116	74.95		
2eloA	37	75.00		
2hjhA	354	78.29		
1uu1A	335	80.56	c.67.1.1	99993
1wjvA	79	83.56	g.37.1.2,g.37.1.2	114713,114714
2g5gX	268	88.71		
2z2mA	168	89.46		
2gmgA	105	89.65