# List of top-scoring protein chains for t06-w0.5-1-dssp-ehl2-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
1q1aA	289	4.687	c.31.1.5	95561
1yc5A	246	7.215	c.31.1.5	122910
1j8fA	323	7.563	c.31.1.5	62738
1rmdA	116	11.54	g.37.1.1,g.44.1.1	45025,45322
2ctdA	96	11.89	g.37.1.1,g.37.1.1	130792,130793
1l8dA	112	13.71	h.4.12.1	73687
2drpA	66	14.41	g.37.1.1,g.37.1.1	45026,45027
1lv3A	68	17.00	g.39.1.9	78231
2gx9A	129	17.16	d.299.1.1	135828
1vk6A	269	19.20	d.113.1.4,d.113.1.4,g.41.14.1	100852,111609,111610
1ma3A	253	20.52	c.31.1.5	78883
2rhkA	140	22.40		
1tq4A	413	24.62	c.37.1.8	107201
1vqtA	213	31.43	c.1.2.3	120417
2cveA	191	31.57	d.14.1.11,d.58.11.2	130869,130870
2i13A	190	33.56	k.12.1.1	136964
1yuiA	54	34.18	g.37.1.1	45073
2qkdA	404	41.15		
1hk8A	605	47.03	c.7.1.3	83540
2pmzP	48	47.16		
2eloA	37	48.85		
2d9kA	75	53.01		
1a1hA	90	53.82	g.37.1.1,g.37.1.1,g.37.1.1	45004,45005,45006
2fiyA	309	54.76	e.59.1.1	133540
1vqoZ	83	55.63	g.41.8.1	120387
1a1gA	90	57.17	g.37.1.1,g.37.1.1,g.37.1.1	45010,45011,45012
1yfuA	174	59.10	b.82.1.20	123094
1rutX	188	60.01	g.39.1.3,g.39.1.3,g.39.1.3,g.39.1.3	111939,111940,111941,111942
1a1iA	90	61.52	g.37.1.1,g.37.1.1,g.37.1.1	44998,44999,45000
2g5gX	268	65.31		
1llmC	88	65.82	g.37.1.1,g.37.1.1	91059,91060
2c1dA	264	68.45		
3cwfA	122	69.98		
2b4yA	271	70.34	c.31.1.5	127868
1h2iA	209	74.01	d.50.1.3	76550
2qgpA	112	75.98		
1rmd	116	76.91		
3cngA	189	78.36		
2b9dA	52	81.12		
2f42A	179	81.15		
1a7iA	81	81.84	g.39.1.3,g.39.1.3	45143,45144
2z2mA	168	82.73		
2jrpA	81	83.13		
1qxfA	66	83.91	g.41.8.4	96527
1m2kA	249	84.80	c.31.1.5	84754
2hjhA	354	86.10		
3bxuA	71	86.50