# List of top-scoring protein chains for t06-w0.5-1-bys-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
1q1aA	289	2.654	c.31.1.5	95561
1yc5A	246	3.205	c.31.1.5	122910
1j8fA	323	4.662	c.31.1.5	62738
1ma3A	253	8.984	c.31.1.5	78883
2ctdA	96	11.07	g.37.1.1,g.37.1.1	130792,130793
1rmdA	116	11.61	g.37.1.1,g.44.1.1	45025,45322
1lv3A	68	12.95	g.39.1.9	78231
1l8dA	112	14.19	h.4.12.1	73687
2drpA	66	15.12	g.37.1.1,g.37.1.1	45026,45027
1vk6A	269	15.71	d.113.1.4,d.113.1.4,g.41.14.1	100852,111609,111610
2gx9A	129	20.44	d.299.1.1	135828
2rhkA	140	22.78		
1yuiA	54	25.46	g.37.1.1	45073
2cveA	191	27.65	d.14.1.11,d.58.11.2	130869,130870
1tq4A	413	27.87	c.37.1.8	107201
2i13A	190	32.43	k.12.1.1	136964
1vqtA	213	34.92	c.1.2.3	120417
2qkdA	404	36.82		
1a1hA	90	40.41	g.37.1.1,g.37.1.1,g.37.1.1	45004,45005,45006
1a1gA	90	41.50	g.37.1.1,g.37.1.1,g.37.1.1	45010,45011,45012
1hk8A	605	42.46	c.7.1.3	83540
2d9kA	75	44.13		
2b9dA	52	53.96		
2pmzP	48	54.24		
1vqoZ	83	55.86	g.41.8.1	120387
2eloA	37	56.96		
2fiyA	309	58.90	e.59.1.1	133540
1wjvA	79	60.14	g.37.1.2,g.37.1.2	114713,114714
1qxfA	66	61.27	g.41.8.4	96527
1a1iA	90	63.82	g.37.1.1,g.37.1.1,g.37.1.1	44998,44999,45000
1yfuA	174	63.84	b.82.1.20	123094
1x31D	99	66.94		
1lkoA	191	67.12	a.25.1.1,g.41.5.1	78063,78064
1llmC	88	69.73	g.37.1.1,g.37.1.1	91059,91060
2f42A	179	72.56		
1rmd	116	72.77		
1a7iA	81	74.00	g.39.1.3,g.39.1.3	45143,45144
2gnrA	145	75.03		
1wjpA	107	77.06	g.37.1.1,g.37.1.1,g.37.1.1	114705,114706,114707
3bxuA	71	77.24		
2gmgA	105	82.06		
2hjhA	354	82.11		
1m2kA	249	83.34	c.31.1.5	84754
3cwfA	122	84.31		
1x8hA	228	84.63	d.157.1.1	114961
2gagD	99	86.07		
1oksA	56	88.11	a.8.5.1	93271
2b4yA	271	89.38	c.31.1.5	127868