# List of top-scoring protein chains for t06-w0.5-1-alpha-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
1q1aA	289	2.829	c.31.1.5	95561
1yc5A	246	2.893	c.31.1.5	122910
1j8fA	323	4.428	c.31.1.5	62738
1ma3A	253	9.321	c.31.1.5	78883
1l8dA	112	10.39	h.4.12.1	73687
1lv3A	68	10.58	g.39.1.9	78231
2ctdA	96	10.71	g.37.1.1,g.37.1.1	130792,130793
1rmdA	116	12.41	g.37.1.1,g.44.1.1	45025,45322
2drpA	66	15.81	g.37.1.1,g.37.1.1	45026,45027
1vk6A	269	16.34	d.113.1.4,d.113.1.4,g.41.14.1	100852,111609,111610
1tq4A	413	19.65	c.37.1.8	107201
2gx9A	129	23.48	d.299.1.1	135828
2cveA	191	27.60	d.14.1.11,d.58.11.2	130869,130870
2rhkA	140	29.23		
1vqtA	213	30.58	c.1.2.3	120417
1yuiA	54	33.01	g.37.1.1	45073
2qkdA	404	37.66		
2i13A	190	44.17	k.12.1.1	136964
1vqoZ	83	47.87	g.41.8.1	120387
1rutX	188	47.88	g.39.1.3,g.39.1.3,g.39.1.3,g.39.1.3	111939,111940,111941,111942
1m2kA	249	48.17	c.31.1.5	84754
2eloA	37	51.31		
2d9kA	75	51.94		
2fiyA	309	53.42	e.59.1.1	133540
1hk8A	605	54.32	c.7.1.3	83540
1a7iA	81	55.60	g.39.1.3,g.39.1.3	45143,45144
2hjhA	354	58.09		
2b9dA	52	59.51		
1a1hA	90	61.62	g.37.1.1,g.37.1.1,g.37.1.1	45004,45005,45006
2pmzP	48	63.34		
3cngA	189	63.65		
1a1gA	90	67.67	g.37.1.1,g.37.1.1,g.37.1.1	45010,45011,45012
1qxfA	66	72.08	g.41.8.4	96527
1a1iA	90	72.63	g.37.1.1,g.37.1.1,g.37.1.1	44998,44999,45000
1w24A	182	72.65	d.159.1.7	120579
1yfuA	174	74.23	b.82.1.20	123094
1v60A	123	75.43		
2ct0A	74	77.09		
1x31D	99	77.43		
1uu1A	335	77.48	c.67.1.1	99993
2z2mA	168	77.92		
2gmgA	105	77.93		
1lkoA	191	78.27	a.25.1.1,g.41.5.1	78063,78064
2jrpA	81	78.32		
1oksA	56	80.27	a.8.5.1	93271
1wjvA	79	83.74	g.37.1.2,g.37.1.2	114713,114714
1x8hA	228	84.66	d.157.1.1	114961
1llmC	88	85.68	g.37.1.1,g.37.1.1	91059,91060
2hu9A	130	87.38		
3bxuA	71	89.35		
1rmd	116	89.35