# List of top-scoring protein chains for t06-w0.5-1-CB_burial_14_7-0.3-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
1yc5A	246	0.5167	c.31.1.5	122910
1q1aA	289	1.150	c.31.1.5	95561
1vk6A	269	1.695	d.113.1.4,d.113.1.4,g.41.14.1	100852,111609,111610
1j8fA	323	2.012	c.31.1.5	62738
2b4yA	271	3.307	c.31.1.5	127868
1hk8A	605	4.302	c.7.1.3	83540
1ma3A	253	5.215	c.31.1.5	78883
1rmdA	116	6.208	g.37.1.1,g.44.1.1	45025,45322
2ctdA	96	6.807	g.37.1.1,g.37.1.1	130792,130793
3cngA	189	6.832		
1m2kA	249	6.947	c.31.1.5	84754
2drpA	66	9.607	g.37.1.1,g.37.1.1	45026,45027
1lkoA	191	12.30	a.25.1.1,g.41.5.1	78063,78064
2qgpA	112	12.50		
1lv3A	68	13.30	g.39.1.9	78231
1a7iA	81	14.35	g.39.1.3,g.39.1.3	45143,45144
2rhkA	140	22.21		
1l8dA	112	22.61	h.4.12.1	73687
2pmzP	48	23.86		
2gx9A	129	24.76	d.299.1.1	135828
1llmC	88	26.90	g.37.1.1,g.37.1.1	91059,91060
2i13A	190	27.72	k.12.1.1	136964
1h2iA	209	29.40	d.50.1.3	76550
1rmd	116	31.35		
1m48A	133	32.36	a.26.1.2	74443
1zsoA	164	32.37	b.166.1.1	125610
1a1hA	90	33.87	g.37.1.1,g.37.1.1,g.37.1.1	45004,45005,45006
1miwA	404	34.94	a.173.1.1,d.218.1.4	79162,79163
2hjhA	354	35.97		
2jrpA	81	36.65		
1a1gA	90	41.50	g.37.1.1,g.37.1.1,g.37.1.1	45010,45011,45012
2b9dA	52	44.35		
2ehsA	77	49.62		
1a1iA	90	49.68	g.37.1.1,g.37.1.1,g.37.1.1	44998,44999,45000
2airB	153	51.25	d.58.2.1,g.41.7.1	126832,126833
1pa4A	116	51.71	d.52.7.1	94409
1s3qA	173	56.59	a.25.1.1	118848
1zu1A	127	58.16		
2cveA	191	59.35	d.14.1.11,d.58.11.2	130869,130870
1vqoZ	83	61.81	g.41.8.1	120387
2gnrA	145	64.10		
2qkdA	404	65.13		
2diiA	61	66.13	a.240.1.1	131530
2rk5A	87	66.76		
1vkuA	100	67.08	a.28.1.1	108690
1twfI	122	67.36	g.41.3.1,g.41.3.1	112733,112734
1t8kA	77	68.65	a.28.1.1	106666
2e6rA	92	68.88		
2qnwA	82	69.44		
2r5xA	129	70.60		
2eloA	37	72.50		
1wfeA	86	79.03	g.80.1.1	114579
2hwjA	205	79.04		
3ce7A	107	84.70		
1wjpA	107	86.26	g.37.1.1,g.37.1.1,g.37.1.1	114705,114706,114707
2vfkA	205	86.32		
1ku0A	388	86.34	c.69.1.18	72994