# List of top-scoring protein chains for t06-w0.5-1-CB8-sep9-0.3-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
1yc5A	246	0.8183	c.31.1.5	122910
1q1aA	289	0.8277	c.31.1.5	95561
1j8fA	323	1.656	c.31.1.5	62738
2ctdA	96	2.178	g.37.1.1,g.37.1.1	130792,130793
2drpA	66	2.189	g.37.1.1,g.37.1.1	45026,45027
1ma3A	253	2.867	c.31.1.5	78883
1rmdA	116	5.397	g.37.1.1,g.44.1.1	45025,45322
1vk6A	269	6.377	d.113.1.4,d.113.1.4,g.41.14.1	100852,111609,111610
1lv3A	68	7.241	g.39.1.9	78231
2i13A	190	8.854	k.12.1.1	136964
1hk8A	605	9.092	c.7.1.3	83540
1l8dA	112	11.14	h.4.12.1	73687
1m2kA	249	15.24	c.31.1.5	84754
2rhkA	140	17.30		
2b9dA	52	17.75		
2qgpA	112	18.93		
1a1gA	90	20.47	g.37.1.1,g.37.1.1,g.37.1.1	45010,45011,45012
2gx9A	129	20.63	d.299.1.1	135828
2j6aA	141	23.73		
1a1iA	90	24.02	g.37.1.1,g.37.1.1,g.37.1.1	44998,44999,45000
1a1hA	90	24.64	g.37.1.1,g.37.1.1,g.37.1.1	45004,45005,45006
2hjhA	354	25.42		
2b4yA	271	25.58	c.31.1.5	127868
1tq4A	413	26.24	c.37.1.8	107201
1yuiA	54	29.65	g.37.1.1	45073
1llmC	88	34.72	g.37.1.1,g.37.1.1	91059,91060
1h2iA	209	36.24	d.50.1.3	76550
3cngA	189	37.03		
1lkoA	191	37.39	a.25.1.1,g.41.5.1	78063,78064
2ehsA	77	37.85		
2pmzP	48	39.08		
1h6zA	913	39.50	c.1.12.2,c.8.1.1,d.142.1.5	70906,70907,70908
1vqoZ	83	41.45	g.41.8.1	120387
2jrpA	81	44.02		
2diiA	61	44.25	a.240.1.1	131530
1ub1A	133	44.59	d.10.1.3	99140
1kdoA	227	45.66	c.37.1.1	68478
2ppwA	216	48.77		
2rk5A	87	50.56		
1ku0A	388	54.21	c.69.1.18	72994
2eloA	37	55.43		
1m48A	133	56.30	a.26.1.2	74443
2r5nA	669	57.29		
1miwA	404	57.41	a.173.1.1,d.218.1.4	79162,79163
2o1rA	81	61.12		
3bxuA	71	62.02		
1s3qA	173	63.38	a.25.1.1	118848
2fiyA	309	65.62	e.59.1.1	133540
2qkdA	404	66.42		
1m4zA	238	67.57	b.34.12.1	78630
1qxfA	66	69.45	g.41.8.4	96527
1t8kA	77	73.13	a.28.1.1	106666
1wjvA	79	73.49	g.37.1.2,g.37.1.2	114713,114714
1vkuA	100	75.68	a.28.1.1	108690
2c1dA	264	76.38		
1twfI	122	78.25	g.41.3.1,g.41.3.1	112733,112734
1a7iA	81	78.67	g.39.1.3,g.39.1.3	45143,45144
1jjzA	29	78.80	g.3.3.1	71699
2d9kA	75	81.24		
2qnwA	82	81.67		
1rmd	116	83.23		
1zsoA	164	83.36	b.166.1.1	125610
1h8bA	75	85.21	a.39.1.7	60736
2gjdA	157	87.14