# List of top-scoring protein chains for t06-80-60-80-str2+near-backbone-11-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1vzyA 291 1.417 d.193.1.1,g.81.1.1 114042,114043 1yc5A 246 2.485 c.31.1.5 122910 2z2mA 168 3.772 2zc3A 168 5.961 1vq0A 302 7.187 d.193.1.1,g.81.1.1 114000,114001 1x2iA 75 9.055 a.60.2.5 121641 1wwhA 119 9.928 d.58.7.1 121358 1otjA 283 10.28 b.82.2.5 93517 2i0xA 85 12.14 1mw5A 187 12.34 d.259.1.1 91477 2e5iA 124 12.78 2bh9A 489 13.94 1o57A 291 15.62 a.4.5.40,c.61.1.1 92483,92484 1mzhA 225 16.84 c.1.10.1 79698 2ej9A 237 17.21 2gwmA 200 18.49 2v9vA 135 18.53 1mzbA 136 19.39 a.4.5.42 91497 2a15A 139 21.65 d.17.4.3 125973 1kk8B 139 22.53 a.39.1.5 77430 1sg6A 393 22.91 e.22.1.1 105522 2va8A 715 23.77 1ohpA 125 26.04 d.17.4.3 118702 1ja9A 274 26.63 c.2.1.2 62817 1mzgA 146 27.34 d.224.1.1 79696 2a8eA 220 27.38 d.296.1.1 126397 1v54D 147 28.21 f.23.1.1 100325 2pbrA 195 28.55 2oieA 111 30.29 a.204.1.2 139092 1tzzA 392 30.86 c.1.11.2,d.54.1.1 112896,112897 2dkzA 84 32.57 2d9kA 75 32.62 2q0zX 339 33.91 1vqzA 341 35.00 d.224.1.3,d.104.1.3 120426,120427 3bs3A 76 35.11 2px6A 316 35.92 2h5xA 196 36.26 1uxy 340 36.57 1lddA 74 38.65 a.4.5.34 73841 1m4zA 238 41.03 b.34.12.1 78630 2is9A 204 41.05 2diuA 96 41.47 3d9rA 135 41.62 1tuhA 156 42.41 d.17.4.11 107345 2bv5A 282 44.74 1cukA 203 45.03 a.5.1.1,a.60.2.1,b.40.4.2 16273,17946,25265 1qksA 567 47.02 a.3.1.2,b.70.2.1 15951,27710 1ns5A 155 47.32 c.116.1.3 80705 2dsjA 423 48.60 1sc6A 404 49.02 c.2.1.4,c.23.12.1,d.58.18.1 118932,118933,118934 2aaoA 166 49.06 1dqsA 393 49.18 e.22.1.1 43347 1sfeA 180 49.23 a.4.2.1,c.55.7.1 16073,33748 1nh8A 304 50.96 c.94.1.1,d.58.5.3 80507,80508 1cuk 203 52.04 1a9nB 96 52.19 d.58.7.1 39165 1xfkA 336 54.60 c.42.1.1 115264 3bjoA 103 54.85 1l6wA 220 54.88 c.1.10.1 73632 1p9qC 256 56.71 a.5.8.1,d.235.1.2,d.58.11.3 104093,104094,104095 1j5sA 463 58.42 c.1.9.8 71580 1y1xA 191 58.62 a.39.1.8 116374 2v1xA 591 59.14 1tp6A 128 60.37 d.17.4.12 107184 2z3qA 119 61.18 2f3nA 76 61.63 a.60.1.2 132885 2pe8A 105 63.27 2og9A 393 64.89 1zsyA 357 67.12 1rmdA 116 67.12 g.37.1.1,g.44.1.1 45025,45322 1csnA 298 67.42 d.144.1.7 41664 1v33A 366 67.49 d.264.1.1 100278 1xmxA 385 69.28 c.52.1.26 115568 2eayA 233 69.99 2zadA 345 70.98 2c07A 285 71.54 c.2.1.2 129577 1eexA 554 74.38 c.1.19.3 29650 1r3sA 367 77.08 c.1.22.1 96963 2cghA 268 78.69 2amhA 207 81.50 c.51.4.2 127019 2dxeA 160 81.81 d.58.6.1 131870 2d13A 227 81.93 c.26.2.1 131121 2hinA 71 82.13 1e6wA 260 82.92 c.2.1.2 59326 2oqyA 391 83.19 1ex2A 189 84.98 c.51.4.2 33225 2ph3A 245 87.21 2doaA 104 87.74 3cbgA 232 89.39