Best Alignments for TR476

To select the top models, SAM generates pairwise alignments of the target sequence and the best-scoring templates. The alignments with the best E-values are presented here.

Warning: E-values smaller than about 0.001 may be overly optimistic.

Template	Template E-value	A2M alignment	SCOP Domain(s)
1ma3A	1.5826e+00	1ma3A/TR476-1ma3A-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	c.31.1.5
1l8dA	4.1151e+00	1l8dA/TR476-1l8dA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	h.4.12.1
1q1aA	4.8758e+00	1q1aA/TR476-1q1aA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	c.31.1.5
1hnnA	5.3776e+00	1hnnA/TR476-1hnnA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	c.66.1.15
2a14A	5.4590e+00	2a14A/TR476-2a14A-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	c.66.1.15
1lv3A	7.3333e+00	1lv3A/TR476-1lv3A-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	g.39.1.9
2i62A	7.3567e+00	2i62A/TR476-2i62A-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
2hjhA	8.0966e+00	2hjhA/TR476-2hjhA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
1j8fA	9.3957e+00	1j8fA/TR476-1j8fA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	c.31.1.5
2ctdA	1.1279e+01	2ctdA/TR476-2ctdA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	g.37.1.1 g.37.1.1
1yc5A	1.1467e+01	1yc5A/TR476-1yc5A-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	c.31.1.5
2drpA	1.4848e+01	2drpA/TR476-2drpA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	g.37.1.1 g.37.1.1
1jj2Y	1.5554e+01	1jj2Y/TR476-1jj2Y-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	g.41.8.1
1vqoZ	1.6177e+01	1vqoZ/TR476-1vqoZ-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	g.41.8.1
2gx9A	1.7391e+01	2gx9A/TR476-2gx9A-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	d.299.1.1
2rhkA	2.4387e+01	2rhkA/TR476-2rhkA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
1s72Z	2.5404e+01	1s72Z/TR476-1s72Z-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	g.41.8.1
2fiyA	2.5603e+01	2fiyA/TR476-2fiyA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	e.59.1.1
2eloA	2.6616e+01	2eloA/TR476-2eloA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
2pmzP	2.7090e+01	2pmzP/TR476-2pmzP-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m

Please cite: Karplus, K. and Karchin, R. and Barrett, C. and Tu, S. and Cline, M. and Diekhans, M. and Grate, L. and Casper, J. and Hughey, R. ``What is the value added by human intervention in protein structure prediction?'' Proteins: Structure Function and Genetics 45(S5):86-91,2001