# List of top-scoring protein chains for TR476.t04-w0.5 hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2gx9A	129	14.20	d.299.1.1	135828
2eoqA	46	20.78		
1l8dA	112	23.89	h.4.12.1	73687
1meyC	87	25.12	k.12.1.1	46430
1qqtA	551	30.19	a.27.1.1,c.26.1.1,g.41.1.1	16923,31590,45175
1f4lA	551	30.66	a.27.1.1,c.26.1.1,g.41.1.1	59648,59649,59650
1pfvA	551	30.69	a.27.1.1,c.26.1.1,g.41.1.1	94660,94661,94662
2rhkA	140	36.57		
2i13A	190	38.31	k.12.1.1	136964
2o13A	58	50.74		
2jv3A	110	65.91		
2encA	46	70.26		
1lv3A	68	80.28	g.39.1.9	78231
1tleA	58	87.58	g.3.11.2	44329