# List of top-scoring protein chains for t04-w0.5-1-str4-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
1ma3A	253	1.604	c.31.1.5	78883
1j8fA	323	2.887	c.31.1.5	62738
2hjhA	354	2.929		
2a14A	263	3.719	c.66.1.15	125972
1hnnA	282	4.214	c.66.1.15	65895
2i62A	265	5.337		
1q1aA	289	5.401	c.31.1.5	95561
1vqoZ	83	8.594	g.41.8.1	120387
1l8dA	112	9.206	h.4.12.1	73687
1lv3A	68	10.09	g.39.1.9	78231
1uu1A	335	17.03	c.67.1.1	99993
1jj2Y	73	17.60	g.41.8.1	63110
1yc5A	246	17.77	c.31.1.5	122910
2ctdA	96	19.38	g.37.1.1,g.37.1.1	130792,130793
1m3vA	122	20.63	g.39.1.3,g.39.1.3	84794,84795
1wjvA	79	23.98	g.37.1.2,g.37.1.2	114713,114714
2gx9A	129	25.33	d.299.1.1	135828
2j6aA	141	26.97		
1s72Z	73	31.51	g.41.8.1	105345
2pmzP	48	34.61		
1ocvA	125	36.70	d.17.4.3	86810
2rhkA	140	39.97		
3cwfA	122	44.18		
1uw4A	91	45.20	d.58.7.4	100071
2avuE	192	48.26		
2eloA	37	49.21		
1x31D	99	50.27		
2cklB	165	51.51		
1rmdA	116	51.82	g.37.1.1,g.44.1.1	45025,45322
2i7aA	174	52.98		
1vdfA	46	53.42	h.1.7.1	45580
2drpA	66	53.70	g.37.1.1,g.37.1.1	45026,45027
1q3eA	207	54.09	b.82.3.2	95669
2jrpA	81	55.21		
2rk5A	87	59.42		
2gagD	99	61.01		
2gnrA	145	63.00		
1m2kA	249	65.78	c.31.1.5	84754
1qxfA	66	68.40	g.41.8.4	96527
2qmlA	198	69.77		
2hu9A	130	75.29		
1twfI	122	75.62	g.41.3.1,g.41.3.1	112733,112734
1we9A	64	78.19	g.50.1.2	114549
3cxkA	164	79.26