# List of top-scoring protein chains for t04-w0.5-1-str2-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
1ma3A	253	1.061	c.31.1.5	78883
2a14A	263	1.475	c.66.1.15	125972
1j8fA	323	2.061	c.31.1.5	62738
2i62A	265	2.722		
1q1aA	289	2.847	c.31.1.5	95561
1hnnA	282	2.988	c.66.1.15	65895
2hjhA	354	3.776		
1vqoZ	83	5.201	g.41.8.1	120387
1l8dA	112	5.862	h.4.12.1	73687
1lv3A	68	8.429	g.39.1.9	78231
1jj2Y	73	12.01	g.41.8.1	63110
2ctdA	96	14.25	g.37.1.1,g.37.1.1	130792,130793
1wjvA	79	15.90	g.37.1.2,g.37.1.2	114713,114714
1yc5A	246	17.10	c.31.1.5	122910
2gx9A	129	17.17	d.299.1.1	135828
1m3vA	122	21.87	g.39.1.3,g.39.1.3	84794,84795
1uu1A	335	22.33	c.67.1.1	99993
1s72Z	73	24.32	g.41.8.1	105345
2rhkA	140	24.97		
2cklB	165	29.81		
2pmzP	48	32.60		
1uw4A	91	32.67	d.58.7.4	100071
2eloA	37	34.17		
1ocvA	125	35.61	d.17.4.3	86810
2gnrA	145	38.97		
2i7aA	174	39.80		
2avuE	192	40.21		
2drpA	66	45.33	g.37.1.1,g.37.1.1	45026,45027
1x31D	99	45.78		
1rmdA	116	46.29	g.37.1.1,g.44.1.1	45025,45322
2j6aA	141	47.06		
2jrpA	81	48.85		
2qmlA	198	50.38		
2obfA	289	53.22		
3cwfA	122	53.95		
1qxfA	66	60.81	g.41.8.4	96527
2gagD	99	61.40		
1vdfA	46	63.44	h.1.7.1	45580
1gppA	237	64.01	b.86.1.2	76262
1twfI	122	68.42	g.41.3.1,g.41.3.1	112733,112734
1q0sA	259	70.32	c.66.1.28	95509
3cxkA	164	72.35		
1jr5A	90	73.10	a.150.1.1	67113
1oh0A	131	76.79	d.17.4.3	87004
2hu9A	130	81.08		
2g72A	289	85.19	c.66.1.15	134724
2ausB	60	85.47		
1hy0A	466	89.83	a.127.1.1	61392