# List of top-scoring protein chains for t04-w0.5-1-pb-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
1ma3A	253	0.4324	c.31.1.5	78883
1j8fA	323	1.014	c.31.1.5	62738
1q1aA	289	1.137	c.31.1.5	95561
2a14A	263	3.430	c.66.1.15	125972
2hjhA	354	3.745		
1wjvA	79	4.076	g.37.1.2,g.37.1.2	114713,114714
1yc5A	246	4.085	c.31.1.5	122910
2i62A	265	8.964		
1hnnA	282	9.156	c.66.1.15	65895
2ctdA	96	10.02	g.37.1.1,g.37.1.1	130792,130793
2i7aA	174	12.18		
1lv3A	68	12.65	g.39.1.9	78231
1we9A	64	13.28	g.50.1.2	114549
1vqoZ	83	14.34	g.41.8.1	120387
2drpA	66	14.75	g.37.1.1,g.37.1.1	45026,45027
2cklA	108	16.62		
1l8dA	112	17.33	h.4.12.1	73687
2j6aA	141	20.25		
1uw4A	91	23.03	d.58.7.4	100071
1jj2Y	73	26.63	g.41.8.1	63110
1rmdA	116	27.27	g.37.1.1,g.44.1.1	45025,45322
1m3vA	122	34.38	g.39.1.3,g.39.1.3	84794,84795
2eloA	37	38.89		
1s72Z	73	43.19	g.41.8.1	105345
1x31D	99	44.09		
1qxfA	66	45.62	g.41.8.4	96527
1exrA	148	47.48	a.39.1.5	17299
2gagD	99	49.14		
1vk6A	269	50.01	d.113.1.4,d.113.1.4,g.41.14.1	100852,111609,111610
2ctuA	73	55.83		
2hu9A	130	57.44		
6rxnA	45	58.24	g.41.5.1	45222
2d9kA	75	58.65		
1uu1A	335	61.88	c.67.1.1	99993
1twfI	122	64.06	g.41.3.1,g.41.3.1	112733,112734
1g2fC	90	64.47	k.12.1.1	60222
1dxgA	36	67.09	g.41.5.2	45247
2ausB	60	68.00		
1kqqA	139	74.64	a.4.3.1	72885
2o1rA	81	75.82		
1brfA	53	75.96	g.41.5.1	45236
1thfD	253	76.57	c.1.2.1	28535
2jrrA	67	77.83		
2avuE	192	77.98		
2e72A	49	79.08		
1bq9A	54	79.71	g.41.5.1	45238
2qmlA	198	80.70		
2vpbA	65	80.93		
2rk5A	87	83.84		
1yfuA	174	86.41	b.82.1.20	123094
1a7iA	81	86.96	g.39.1.3,g.39.1.3	45143,45144
3cxkA	164	87.28		
2gx9A	129	87.96	d.299.1.1	135828
1rb9	53	88.61		
2pveA	54	89.17		
2jrpA	81	89.93