# List of top-scoring protein chains for t04-w0.5-1-o_sep-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
1ma3A	253	1.391	c.31.1.5	78883
2a14A	263	3.295	c.66.1.15	125972
1hnnA	282	4.108	c.66.1.15	65895
2i62A	265	4.484		
1vqoZ	83	5.259	g.41.8.1	120387
1j8fA	323	5.472	c.31.1.5	62738
1q1aA	289	6.596	c.31.1.5	95561
1l8dA	112	7.064	h.4.12.1	73687
2hjhA	354	9.231		
1jj2Y	73	13.10	g.41.8.1	63110
1lv3A	68	13.38	g.39.1.9	78231
2gx9A	129	13.87	d.299.1.1	135828
1yc5A	246	15.40	c.31.1.5	122910
1uu1A	335	18.13	c.67.1.1	99993
1uw4A	91	20.88	d.58.7.4	100071
1m3vA	122	24.08	g.39.1.3,g.39.1.3	84794,84795
2ctdA	96	25.09	g.37.1.1,g.37.1.1	130792,130793
2rhkA	140	26.12		
1wjvA	79	28.85	g.37.1.2,g.37.1.2	114713,114714
1s72Z	73	30.76	g.41.8.1	105345
1ocvA	125	38.07	d.17.4.3	86810
2pmzP	48	48.55		
3cwfA	122	48.85		
2avuE	192	49.76		
1rmdA	116	52.31	g.37.1.1,g.44.1.1	45025,45322
2eloA	37	54.41		
1h2iA	209	55.12	d.50.1.3	76550
1q3eA	207	57.59	b.82.3.2	95669
1thfD	253	62.35	c.1.2.1	28535
2qmlA	198	64.52		
2gnrA	145	68.21		
2cveA	191	70.21	d.14.1.11,d.58.11.2	130869,130870
2imfA	203	71.26		
1jr5A	90	72.47	a.150.1.1	67113
2obfA	289	77.25		
2drpA	66	79.09	g.37.1.1,g.37.1.1	45026,45027
2jrpA	81	80.19		
2rk5A	87	83.12		
2i7aA	174	83.52		
1m2kA	249	83.68	c.31.1.5	84754
1x8hA	228	85.42	d.157.1.1	114961
1qxfA	66	85.79	g.41.8.4	96527
2hu9A	130	86.51		
1we9A	64	87.02	g.50.1.2	114549
2cklB	165	87.28		
2ppwA	216	87.64		
2czqA	205	88.71		
1q0sA	259	89.50	c.66.1.28	95509