# List of top-scoring protein chains for t04-w0.5-1-o_notor2-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
1ma3A	253	2.298	c.31.1.5	78883
2a14A	263	3.670	c.66.1.15	125972
1hnnA	282	4.389	c.66.1.15	65895
2i62A	265	4.899		
1j8fA	323	6.302	c.31.1.5	62738
1vqoZ	83	6.888	g.41.8.1	120387
1l8dA	112	9.188	h.4.12.1	73687
1q1aA	289	9.448	c.31.1.5	95561
2hjhA	354	10.60		
1jj2Y	73	15.12	g.41.8.1	63110
1lv3A	68	16.06	g.39.1.9	78231
1uu1A	335	16.72	c.67.1.1	99993
2gx9A	129	17.19	d.299.1.1	135828
1uw4A	91	24.50	d.58.7.4	100071
1yc5A	246	24.83	c.31.1.5	122910
2ctdA	96	31.13	g.37.1.1,g.37.1.1	130792,130793
1m3vA	122	34.67	g.39.1.3,g.39.1.3	84794,84795
1s72Z	73	36.71	g.41.8.1	105345
2rhkA	140	39.60		
1ocvA	125	42.88	d.17.4.3	86810
1h2iA	209	46.92	d.50.1.3	76550
2avuE	192	47.26		
3cwfA	122	49.99		
2pmzP	48	54.73		
1wjvA	79	54.75	g.37.1.2,g.37.1.2	114713,114714
1rmdA	116	58.59	g.37.1.1,g.44.1.1	45025,45322
2eloA	37	59.38		
2cveA	191	60.49	d.14.1.11,d.58.11.2	130869,130870
2qmlA	198	61.74		
1thfD	253	64.36	c.1.2.1	28535
1jr5A	90	66.80	a.150.1.1	67113
3c8dA	403	74.65		
1q3eA	207	77.52	b.82.3.2	95669
2obfA	289	77.80		
2imfA	203	82.75		
2i7aA	174	85.91		
1uf3A	228	86.83	d.159.1.6	99317
1x31D	99	88.91