# List of top-scoring protein chains for t04-w0.5-1-o_notor-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
1ma3A	253	1.749	c.31.1.5	78883
2a14A	263	2.898	c.66.1.15	125972
1hnnA	282	3.415	c.66.1.15	65895
2i62A	265	4.130		
1j8fA	323	4.835	c.31.1.5	62738
1q1aA	289	6.876	c.31.1.5	95561
1vqoZ	83	6.971	g.41.8.1	120387
1l8dA	112	7.754	h.4.12.1	73687
2hjhA	354	9.463		
1lv3A	68	12.97	g.39.1.9	78231
1uu1A	335	13.26	c.67.1.1	99993
1jj2Y	73	15.94	g.41.8.1	63110
2gx9A	129	17.11	d.299.1.1	135828
1yc5A	246	19.63	c.31.1.5	122910
2ctdA	96	25.82	g.37.1.1,g.37.1.1	130792,130793
1m3vA	122	27.58	g.39.1.3,g.39.1.3	84794,84795
1uw4A	91	28.94	d.58.7.4	100071
1s72Z	73	37.02	g.41.8.1	105345
2rhkA	140	39.28		
2avuE	192	43.14		
1h2iA	209	46.86	d.50.1.3	76550
1ocvA	125	48.87	d.17.4.3	86810
1wjvA	79	49.52	g.37.1.2,g.37.1.2	114713,114714
2pmzP	48	50.84		
1q3eA	207	53.30	b.82.3.2	95669
2eloA	37	53.87		
1rmdA	116	54.81	g.37.1.1,g.44.1.1	45025,45322
3cwfA	122	55.63		
2qmlA	198	56.68		
1thfD	253	57.13	c.1.2.1	28535
2cveA	191	60.17	d.14.1.11,d.58.11.2	130869,130870
2cklB	165	64.30		
2obfA	289	66.97		
2i7aA	174	68.14		
1x31D	99	73.84		
2imfA	203	74.15		
1jr5A	90	74.56	a.150.1.1	67113
3c8dA	403	77.78		
2hu9A	130	83.16		
2rk5A	87	84.69		
1q0sA	259	85.82	c.66.1.28	95509
1gppA	237	86.62	b.86.1.2	76262
2gagD	99	88.47		
2gnrA	145	88.88		
2drpA	66	89.39	g.37.1.1,g.37.1.1	45026,45027