# List of top-scoring protein chains for t04-w0.5-1-near-backbone-11-0.3-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
1ma3A	253	3.411	c.31.1.5	78883
1q1aA	289	8.165	c.31.1.5	95561
1j8fA	323	9.679	c.31.1.5	62738
1yc5A	246	16.34	c.31.1.5	122910
2drpA	66	21.66	g.37.1.1,g.37.1.1	45026,45027
1vqoZ	83	27.09	g.41.8.1	120387
2hjhA	354	28.27		
1lv3A	68	32.99	g.39.1.9	78231
1l8dA	112	41.47	h.4.12.1	73687
1wjvA	79	43.59	g.37.1.2,g.37.1.2	114713,114714
1vk6A	269	46.92	d.113.1.4,d.113.1.4,g.41.14.1	100852,111609,111610
2jrpA	81	47.92		
1uu1A	335	48.07	c.67.1.1	99993
1jj2Y	73	48.54	g.41.8.1	63110
1uf3A	228	56.62	d.159.1.6	99317
1m2kA	249	58.83	c.31.1.5	84754
1ocvA	125	61.56	d.17.4.3	86810
2eloA	37	70.94		
1a6jA	163	73.55	d.112.1.1	40915
2onuA	152	75.00		
1m3vA	122	79.38	g.39.1.3,g.39.1.3	84794,84795
2p5iA	288	86.08		
2i62A	265	89.86		
1aayA	90	89.93	g.37.1.1,g.37.1.1,g.37.1.1	45001,45002,45003