# List of top-scoring protein chains for t04-w0.5-1-n_sep-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
1ma3A	253	3.660	c.31.1.5	78883
1hnnA	282	6.934	c.66.1.15	65895
2hjhA	354	9.332		
1q1aA	289	9.372	c.31.1.5	95561
2a14A	263	9.416	c.66.1.15	125972
1j8fA	323	10.02	c.31.1.5	62738
2i62A	265	11.75		
1l8dA	112	12.60	h.4.12.1	73687
1vqoZ	83	12.83	g.41.8.1	120387
1lv3A	68	21.04	g.39.1.9	78231
1wjvA	79	23.94	g.37.1.2,g.37.1.2	114713,114714
1m3vA	122	24.53	g.39.1.3,g.39.1.3	84794,84795
1yc5A	246	25.41	c.31.1.5	122910
1jj2Y	73	25.44	g.41.8.1	63110
2drpA	66	28.47	g.37.1.1,g.37.1.1	45026,45027
2ctdA	96	29.83	g.37.1.1,g.37.1.1	130792,130793
1uu1A	335	31.08	c.67.1.1	99993
2gx9A	129	34.09	d.299.1.1	135828
2pmzP	48	42.63		
2i7aA	174	46.99		
1s72Z	73	48.03	g.41.8.1	105345
1m2kA	249	49.86	c.31.1.5	84754
1we9A	64	56.45	g.50.1.2	114549
1h2iA	209	56.75	d.50.1.3	76550
1uw4A	91	57.04	d.58.7.4	100071
2avuE	192	57.84		
2j6aA	141	57.93		
2cklB	165	57.98		
2rhkA	140	58.99		
2gnrA	145	65.91		
1g2fC	90	66.23	k.12.1.1	60222
1rmdA	116	66.26	g.37.1.1,g.44.1.1	45025,45322
1vk6A	269	67.44	d.113.1.4,d.113.1.4,g.41.14.1	100852,111609,111610
3cwfA	122	69.26		
2eloA	37	71.19		
1gppA	237	77.24	b.86.1.2	76262
1ocvA	125	77.37	d.17.4.3	86810
2jrpA	81	80.24		
2hu9A	130	88.05