# List of top-scoring protein chains for t04-w0.5-1-n_notor2-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2i7aA 174 0.5366 1q0sA 259 2.568 c.66.1.28 95509 2gdnA 267 2.790 1l8dA 112 3.332 h.4.12.1 73687 2ctdA 96 5.842 g.37.1.1,g.37.1.1 130792,130793 2a14A 263 6.493 c.66.1.15 125972 2j6aA 141 6.958 1ma3A 253 7.640 c.31.1.5 78883 1vqoZ 83 8.578 g.41.8.1 120387 1moq 368 9.367 1rjdA 334 9.553 c.66.1.37 97558 1np8A 159 12.67 a.39.1.8 92022 1uw4A 91 13.05 d.58.7.4 100071 2ob9A 130 14.66 2drpA 66 14.71 g.37.1.1,g.37.1.1 45026,45027 1lv3A 68 14.74 g.39.1.9 78231 2j13A 247 14.91 c.6.2.3 137934 1wjvA 79 15.13 g.37.1.2,g.37.1.2 114713,114714 2rhkA 140 15.16 1q1aA 289 16.03 c.31.1.5 95561 2pajA 492 16.83 1z6uA 150 17.61 2qkpA 151 18.94 2jheA 190 19.21 1fkx 349 19.39 2obfA 289 20.06 2gx9A 129 20.07 d.299.1.1 135828 1jj2Y 73 20.69 g.41.8.1 63110 1uf3A 228 20.80 d.159.1.6 99317 2e27H 126 22.50 1qv1A 195 22.83 a.39.1.5 96347 2ch4A 320 22.85 b.40.7.1,d.122.1.3 130447,130448 1xbtA 193 23.44 c.37.1.24,g.39.1.14 115080,115081 1k75A 434 24.98 c.82.1.2 68253 2c2hA 192 25.95 c.37.1.8 129668 2cdcA 366 26.96 2qgpA 112 29.06 1rroA 108 30.93 a.39.1.4 17195 1j8fA 323 31.61 c.31.1.5 62738 1e9rA 437 31.99 c.37.1.11 64827 1a8vA 121 32.49 a.140.3.1,b.40.4.5 64712,64713 2d1gA 498 33.63 1we9A 64 33.73 g.50.1.2 114549 2pmzP 48 34.37 1xviA 275 34.57 c.108.1.10 116088 1yf3A 259 35.20 c.66.1.28 123046 1gppA 237 36.23 b.86.1.2 76262 1w2fA 276 38.49 d.143.1.3 109125 1vm8A 534 39.39 c.68.1.5 113670 1rmdA 116 39.98 g.37.1.1,g.44.1.1 45025,45322 3cngA 189 42.44 2f6uA 234 42.79 c.1.4.1 133061 1w1iE 357 43.44 c.1.9.1 109051 1thgA 544 44.52 c.69.1.17 34763 2pusA 852 44.71 1s72Z 73 46.13 g.41.8.1 105345 1yloA 348 46.13 b.49.3.1,c.56.5.4 123659,123660 2gkmA 136 48.52 1hnnA 282 48.78 c.66.1.15 65895 1vdfA 46 50.69 h.1.7.1 45580 1dfoA 417 51.99 c.67.1.4 34480 2c5kT 95 53.02 2avuE 192 53.27 3c8dA 403 53.59 1n0xH 230 54.53 b.1.1.1,b.1.1.2 91528,91529 3b40A 417 55.70 2eloA 37 55.87 1h2iA 209 56.38 d.50.1.3 76550 1yljA 263 57.56 2fqhA 109 57.61 1x3lA 440 60.07 1g2fC 90 61.95 k.12.1.1 60222 1a6vH 120 63.35 b.1.1.1 20257 1go3F 107 64.33 a.60.8.2 65407 1k2fA 190 64.43 b.8.1.2 68054 1q3eA 207 65.73 b.82.3.2 95669 1f75A 249 65.83 c.101.1.1 59662 1ofgA 381 65.91 c.2.1.3,d.81.1.5 30064,39979 2o2zA 323 69.14 1thg 544 69.17 1amuA 563 69.79 e.23.1.1 43351 1a0gA 282 71.76 e.17.1.1 43276 1xvjA 109 71.88 1m3vA 122 74.51 g.39.1.3,g.39.1.3 84794,84795 2d09A 407 75.28 1r85A 379 75.37 c.1.8.3 104839 1htrB 329 77.13 1vk6A 269 77.71 d.113.1.4,d.113.1.4,g.41.14.1 100852,111609,111610 1jr5A 90 78.39 a.150.1.1 67113 3cwfA 122 78.54 1mvwB 145 78.85 i.15.1.1 79524 2qm8A 337 78.94 1y0pA 571 79.01 a.138.1.3,c.3.1.4,d.168.1.1 122507,122508,122509 2jrpA 81 80.24 1zaaC 87 81.30 g.37.1.1,g.37.1.1,g.37.1.1 45013,45014,45015 1ocvA 125 82.38 d.17.4.3 86810 2i75A 320 84.60 2ptrA 462 86.81 1k77A 260 88.24 c.1.15.5 72096 2riqA 160 88.46 1elrA 131 89.68 a.118.8.1 19209