# List of top-scoring protein chains for t04-w0.5-1-n_notor-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
1ma3A	253	7.009	c.31.1.5	78883
1hnnA	282	7.929	c.66.1.15	65895
2hjhA	354	9.182		
1j8fA	323	11.15	c.31.1.5	62738
2a14A	263	13.18	c.66.1.15	125972
2i62A	265	15.64		
1vqoZ	83	16.29	g.41.8.1	120387
1l8dA	112	16.67	h.4.12.1	73687
1q1aA	289	16.73	c.31.1.5	95561
1lv3A	68	24.71	g.39.1.9	78231
1jj2Y	73	29.82	g.41.8.1	63110
1yc5A	246	31.70	c.31.1.5	122910
2ctdA	96	33.20	g.37.1.1,g.37.1.1	130792,130793
1wjvA	79	33.43	g.37.1.2,g.37.1.2	114713,114714
2drpA	66	36.53	g.37.1.1,g.37.1.1	45026,45027
1uu1A	335	37.57	c.67.1.1	99993
1m3vA	122	39.49	g.39.1.3,g.39.1.3	84794,84795
2pmzP	48	52.90		
1s72Z	73	54.71	g.41.8.1	105345
2i7aA	174	55.46		
1uw4A	91	58.17	d.58.7.4	100071
2j6aA	141	61.82		
2gx9A	129	64.29	d.299.1.1	135828
2gnrA	145	70.71		
1ocvA	125	73.73	d.17.4.3	86810
2eloA	37	73.78		
1g2fC	90	77.98	k.12.1.1	60222
2avuE	192	82.97		
1we9A	64	83.76	g.50.1.2	114549
2hu9A	130	87.25		
2cklB	165	87.71		
1vdfA	46	88.49	h.1.7.1	45580
2jrpA	81	89.85		
1x31D	99	89.90