# List of top-scoring protein chains for t04-w0.5-1-dssp-ehl2-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
1ma3A	253	2.754	c.31.1.5	78883
1hnnA	282	5.258	c.66.1.15	65895
1j8fA	323	6.084	c.31.1.5	62738
2a14A	263	6.561	c.66.1.15	125972
1q1aA	289	7.230	c.31.1.5	95561
2hjhA	354	7.898		
2i62A	265	8.756		
1vqoZ	83	10.19	g.41.8.1	120387
1l8dA	112	13.57	h.4.12.1	73687
2gx9A	129	16.20	d.299.1.1	135828
1lv3A	68	17.77	g.39.1.9	78231
2rhkA	140	20.41		
1jj2Y	73	20.94	g.41.8.1	63110
1m3vA	122	22.10	g.39.1.3,g.39.1.3	84794,84795
2ctdA	96	23.64	g.37.1.1,g.37.1.1	130792,130793
1uw4A	91	28.10	d.58.7.4	100071
1wjvA	79	30.43	g.37.1.2,g.37.1.2	114713,114714
2cklB	165	36.82		
2pmzP	48	40.98		
1ocvA	125	41.63	d.17.4.3	86810
1s72Z	73	45.28	g.41.8.1	105345
2eloA	37	45.53		
1uu1A	335	46.38	c.67.1.1	99993
2drpA	66	48.20	g.37.1.1,g.37.1.1	45026,45027
1yc5A	246	51.10	c.31.1.5	122910
1we9A	64	65.48	g.50.1.2	114549
2i7aA	174	66.21		
3cwfA	122	72.16		
2avuE	192	73.94		
2jrpA	81	78.31		
1rmdA	116	80.23	g.37.1.1,g.44.1.1	45025,45322
2gnrA	145	81.64		
1vdfA	46	84.68	h.1.7.1	45580
1m2kA	249	88.59	c.31.1.5	84754
2czqA	205	89.40