# List of top-scoring protein chains for t04-w0.5-1-bys-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
1ma3A	253	1.561	c.31.1.5	78883
1j8fA	323	3.354	c.31.1.5	62738
1q1aA	289	3.433	c.31.1.5	95561
2hjhA	354	4.626		
2a14A	263	7.061	c.66.1.15	125972
1hnnA	282	9.298	c.66.1.15	65895
2i62A	265	10.04		
1vqoZ	83	10.07	g.41.8.1	120387
1l8dA	112	10.68	h.4.12.1	73687
1lv3A	68	14.00	g.39.1.9	78231
1yc5A	246	15.39	c.31.1.5	122910
1wjvA	79	17.39	g.37.1.2,g.37.1.2	114713,114714
2ctdA	96	18.69	g.37.1.1,g.37.1.1	130792,130793
1jj2Y	73	21.74	g.41.8.1	63110
2gx9A	129	22.36	d.299.1.1	135828
1uw4A	91	25.57	d.58.7.4	100071
2rhkA	140	26.40		
1ocvA	125	41.10	d.17.4.3	86810
1s72Z	73	41.77	g.41.8.1	105345
1m3vA	122	44.87	g.39.1.3,g.39.1.3	84794,84795
1uu1A	335	47.78	c.67.1.1	99993
2pmzP	48	48.05		
2eloA	37	49.27		
1x31D	99	51.76		
2drpA	66	52.87	g.37.1.1,g.37.1.1	45026,45027
2i7aA	174	56.78		
1we9A	64	59.33	g.50.1.2	114549
2gnrA	145	60.22		
1rmdA	116	62.21	g.37.1.1,g.44.1.1	45025,45322
2gagD	99	62.82		
1qxfA	66	64.16	g.41.8.4	96527
2cklA	108	64.65		
2cklB	165	67.99		
2avuE	192	69.39		
1twfI	122	72.96	g.41.3.1,g.41.3.1	112733,112734
1gppA	237	73.92	b.86.1.2	76262
1vdfA	46	75.22	h.1.7.1	45580
1oh0A	131	79.22	d.17.4.3	87004
2czqA	205	80.84		
2jrpA	81	83.05		
2hu9A	130	83.29		
1dxgA	36	88.36	g.41.5.2	45247
2j6aA	141	89.37