# List of top-scoring protein chains for t04-w0.5-1-alpha-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
1ma3A	253	2.540	c.31.1.5	78883
1j8fA	323	4.550	c.31.1.5	62738
1q1aA	289	5.868	c.31.1.5	95561
2hjhA	354	6.648		
2a14A	263	9.783	c.66.1.15	125972
1vqoZ	83	10.78	g.41.8.1	120387
2i62A	265	11.74		
1hnnA	282	12.96	c.66.1.15	65895
1l8dA	112	13.23	h.4.12.1	73687
1lv3A	68	14.50	g.39.1.9	78231
1jj2Y	73	19.14	g.41.8.1	63110
1wjvA	79	21.41	g.37.1.2,g.37.1.2	114713,114714
2ctdA	96	24.78	g.37.1.1,g.37.1.1	130792,130793
1uw4A	91	24.93	d.58.7.4	100071
2gx9A	129	26.46	d.299.1.1	135828
1yc5A	246	28.16	c.31.1.5	122910
2rhkA	140	38.51		
1uu1A	335	39.36	c.67.1.1	99993
1s72Z	73	42.96	g.41.8.1	105345
1m3vA	122	48.09	g.39.1.3,g.39.1.3	84794,84795
1we9A	64	56.29	g.50.1.2	114549
2eloA	37	59.32		
1ocvA	125	60.47	d.17.4.3	86810
2pmzP	48	64.39		
1x31D	99	67.12		
2i7aA	174	68.73		
2j6aA	141	70.48		
1rmdA	116	75.41	g.37.1.1,g.44.1.1	45025,45322
2avuE	192	78.66		
2rk5A	87	80.47		
2drpA	66	80.52	g.37.1.1,g.37.1.1	45026,45027
2jrpA	81	80.75		
2cklB	165	81.40		
2hu9A	130	82.47		
1m2kA	249	87.02	c.31.1.5	84754
1qxfA	66	87.26	g.41.8.4	96527
2gagD	99	89.20