# List of top-scoring protein chains for t04-w0.5-1-CB_burial_14_7-0.3-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
1ma3A	253	0.1333	c.31.1.5	78883
1q1aA	289	0.8708	c.31.1.5	95561
1j8fA	323	1.394	c.31.1.5	62738
1yc5A	246	2.677	c.31.1.5	122910
1m2kA	249	3.487	c.31.1.5	84754
1lv3A	68	4.571	g.39.1.9	78231
2hjhA	354	6.464		
1fp0A	88	6.724	g.50.1.2	45361
1we9A	64	7.410	g.50.1.2	114549
2i62A	265	7.563		
1vk6A	269	7.897	d.113.1.4,d.113.1.4,g.41.14.1	100852,111609,111610
1uw4A	91	11.65	d.58.7.4	100071
2a14A	263	11.90	c.66.1.15	125972
1q3eA	207	14.46	b.82.3.2	95669
3cngA	189	15.81		
2gx9A	129	17.31	d.299.1.1	135828
2rhkA	140	17.33		
2qgpA	112	17.95		
2b4yA	271	18.08	c.31.1.5	127868
1l8dA	112	18.25	h.4.12.1	73687
1m48A	133	18.35	a.26.1.2	74443
1vqoZ	83	19.55	g.41.8.1	120387
1hnnA	282	20.27	c.66.1.15	65895
1hk8A	605	23.91	c.7.1.3	83540
2qnwA	82	25.56		
2rk5A	87	26.84		
1ocvA	125	27.15	d.17.4.3	86810
1d09B	153	29.49	d.58.2.1,g.41.7.1	39015,45267
1lkoA	191	30.36	a.25.1.1,g.41.5.1	78063,78064
1jj2Y	73	30.66	g.41.8.1	63110
1a7iA	81	31.13	g.39.1.3,g.39.1.3	45143,45144
2pmzP	48	31.29		
2jz8A	87	31.57		
2ctdA	96	31.99	g.37.1.1,g.37.1.1	130792,130793
1ryt	190	34.50		
2cklA	108	36.10		
2gnrA	145	38.74		
2ehsA	77	39.04		
1m3vA	122	39.34	g.39.1.3,g.39.1.3	84794,84795
2r5xA	129	40.64		
1pa4A	116	44.98	d.52.7.1	94409
2jrpA	81	45.42		
2airB	153	45.98	d.58.2.1,g.41.7.1	126832,126833
2b9dA	52	47.20		
2j6aA	141	49.69		
2qjtA	352	50.32		
2jr1A	79	50.66		
2eloA	37	52.34		
1zu1A	127	56.96		
2vfkA	205	59.07		
1a6jA	163	59.81	d.112.1.1	40915
1vkuA	100	62.09	a.28.1.1	108690
2oxoA	103	64.21		
1pfvA	551	64.34	a.27.1.1,c.26.1.1,g.41.1.1	94660,94661,94662
2diiA	61	66.29	a.240.1.1	131530
2drpA	66	66.99	g.37.1.1,g.37.1.1	45026,45027
1b71A	191	67.43	a.25.1.1,g.41.5.1	16647,45246
2qkdA	404	70.35		
3c8dA	403	71.20		
2fmlA	273	73.53	a.4.5.68,d.113.1.6	133778,133779
4eugA	229	74.10	c.18.1.1	31019
2cveA	191	74.77	d.14.1.11,d.58.11.2	130869,130870
1h2iA	209	76.67	d.50.1.3	76550
2iybE	65	77.05		
2e6rA	92	77.18		
2o1rA	81	77.29		
2puyA	60	79.46		
2djmA	106	79.71		
1wjvA	79	81.82	g.37.1.2,g.37.1.2	114713,114714
2grrA	161	84.64		
1c0eA	157	85.02	c.44.1.1	32638
1rmdA	116	87.01	g.37.1.1,g.44.1.1	45025,45322
2hu9A	130	87.68		
2jvmA	80	88.91		
1fm0E	150	89.15	d.41.5.1	38629