# List of top-scoring protein chains for t04-w0.5-1-CB8-sep9-0.3-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
1ma3A	253	0.3809	c.31.1.5	78883
1j8fA	323	2.643	c.31.1.5	62738
1q1aA	289	2.985	c.31.1.5	95561
2hjhA	354	3.243		
1hnnA	282	4.031	c.66.1.15	65895
2i62A	265	5.653		
1vqoZ	83	5.710	g.41.8.1	120387
2a14A	263	6.632	c.66.1.15	125972
1we9A	64	10.67	g.50.1.2	114549
1l8dA	112	10.78	h.4.12.1	73687
2ctdA	96	11.53	g.37.1.1,g.37.1.1	130792,130793
1jj2Y	73	12.67	g.41.8.1	63110
1yc5A	246	12.84	c.31.1.5	122910
1lv3A	68	13.36	g.39.1.9	78231
2j6aA	141	14.94		
1ocvA	125	15.01	d.17.4.3	86810
2rhkA	140	15.73		
2gx9A	129	20.36	d.299.1.1	135828
2qgpA	112	24.07		
1m2kA	249	25.08	c.31.1.5	84754
1wjvA	79	26.52	g.37.1.2,g.37.1.2	114713,114714
2cklB	165	26.76		
2pmzP	48	27.63		
2drpA	66	28.44	g.37.1.1,g.37.1.1	45026,45027
1h2iA	209	30.94	d.50.1.3	76550
2jrpA	81	32.96		
1vk6A	269	38.99	d.113.1.4,d.113.1.4,g.41.14.1	100852,111609,111610
1rjdA	334	41.82	c.66.1.37	97558
1k2fA	190	43.34	b.8.1.2	68054
1fp0A	88	45.58	g.50.1.2	45361
1s72Z	73	46.40	g.41.8.1	105345
2eloA	37	47.67		
2jtvA	65	49.87		
2fiyA	309	50.71	e.59.1.1	133540
1ylhA	560	60.73		
1g2fC	90	68.47	k.12.1.1	60222
1q3eA	207	69.56	b.82.3.2	95669
2rk5A	87	70.64		
1wf3A	301	70.66	c.37.1.8,d.52.3.1	114574,114575
2c5kT	95	71.69		
2obfA	289	74.69		
1elrA	131	76.76	a.118.8.1	19209
1m3vA	122	77.12	g.39.1.3,g.39.1.3	84794,84795
1uw4A	91	77.36	d.58.7.4	100071
1x31D	99	77.62		
2diiA	61	78.27	a.240.1.1	131530
1zrnA	232	80.00	c.108.1.1	43323
2cklA	108	80.28		
2e6rA	92	81.46		
2r2zA	93	82.92		
2ehsA	77	85.36		
1twfI	122	86.69	g.41.3.1,g.41.3.1	112733,112734
1oh0A	131	88.05	d.17.4.3	87004
1i88A	389	88.15	c.95.1.2,c.95.1.2	66070,66071