# List of top-scoring protein chains for t04-80-60-80-str2+near-backbone-11-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1tuhA 156 2.573 d.17.4.11 107345 2a15A 139 3.458 d.17.4.3 125973 1ocvA 125 4.084 d.17.4.3 86810 1t95A 240 7.275 a.5.8.1,d.235.1.2,d.58.11.3 106705,106706,106707 1x2iA 75 7.645 a.60.2.5 121641 1jr5A 90 7.881 a.150.1.1 67113 3d9rA 135 8.264 2i0xA 85 8.288 1ohpA 125 10.84 d.17.4.3 118702 1vzyA 291 11.99 d.193.1.1,g.81.1.1 114042,114043 1fm2B 520 12.01 2z2mA 168 12.36 1yc5A 246 14.83 c.31.1.5 122910 1mw5A 187 15.57 d.259.1.1 91477 2ej9A 237 15.92 2yruA 118 16.38 1vqzA 341 17.23 d.224.1.3,d.104.1.3 120426,120427 1wveC 80 18.93 a.3.1.1 121335 2zc3A 168 19.01 1ma3A 253 24.43 c.31.1.5 78883 2bv5A 282 26.67 2bh9A 489 27.84 2qkmB 266 28.66 1lm5A 214 30.57 d.211.2.1 74029 1vq0A 302 31.84 d.193.1.1,g.81.1.1 114000,114001 2f3nA 76 33.20 a.60.1.2 132885 2qhbA 86 34.30 2afwA 329 36.15 c.56.5.8 126707 1mzhA 225 36.23 c.1.10.1 79698 1konA 249 38.76 e.39.1.1 72823 1p9qC 256 39.43 a.5.8.1,d.235.1.2,d.58.11.3 104093,104094,104095 1kk8B 139 39.44 a.39.1.5 77430 1zpwX 90 39.48 d.58.58.1 125478 1n81A 186 39.59 a.185.1.1 85388 1or0B 528 41.76 2a8eA 220 45.59 d.296.1.1 126397 2ekcA 262 45.73 1nh9A 87 45.85 d.68.6.1 91878 1qgoA 264 46.13 c.92.1.2 35596 1mw7A 240 46.31 e.39.1.1 79557 2g7uA 257 48.81 2j7vA 298 51.23 1oiaA 95 52.70 d.58.7.1 87051 1rroA 108 53.17 a.39.1.4 17195 3bs3A 76 53.98 2q0zX 339 54.03 2e5iA 124 54.06 1oywA 523 55.10 a.4.5.43,c.37.1.19,c.37.1.19 93760,93761,93762 2a14A 263 55.35 c.66.1.15 125972 2zadA 345 56.23 1fmcA 255 57.73 c.2.1.2 29856 1whxA 111 60.49 d.58.7.1 114654 1j5sA 463 60.72 c.1.9.8 71580 2i5nM 323 61.26 f.26.1.1 137067 1g0oA 283 61.51 c.2.1.2 60181 1sfxA 109 62.38 a.4.5.50 105505 1r8sE 203 63.46 a.118.3.1 97248 1l6wA 220 63.74 c.1.10.1 73632 1v33A 366 63.80 d.264.1.1 100278 2iw1A 374 63.96 c.87.1.8 137738 1qwgA 251 64.53 c.1.27.1 96473 1zbmA 280 64.82 c.94.1.1 124858 2z51A 154 65.21 2f46A 156 65.90 2ehhA 294 66.71 1urnA 97 66.84 d.58.7.1 39153 1ja9A 274 66.90 c.2.1.2 62817 1x19A 359 67.31 2ckxA 83 67.84 1iqcA 308 68.16 a.3.1.5,a.3.1.5 66266,66267 3bfmA 235 68.96 1gdvA 85 69.04 a.3.1.1 60458 1qksA 567 69.22 a.3.1.2,b.70.2.1 15951,27710 1pvaA 110 69.45 a.39.1.4 17207 1lfpA 249 70.51 e.39.1.1 73885 2gwmA 200 71.91 1s8eA 333 72.34 d.159.1.4 105368 1wdcB 156 72.70 a.39.1.5 17302 1gnlA 544 72.74 e.26.1.1 70287 1diiC 80 73.03 a.3.1.1 15925 2d69A 430 73.63 c.1.14.1,d.58.9.1 131292,131293 2qenA 350 74.66 3bb9A 148 74.94 1lj2A 110 75.33 h.1.13.2 73926 1cy5A 97 76.99 a.77.1.3 18430 2c07A 285 79.25 c.2.1.2 129577 2ae5B 528 80.48 1mn8A 100 80.59 a.61.1.6 79318 2v1xA 591 81.97 2i66A 262 82.69 1xkyA 301 83.66 c.1.10.1 122094 2mbrA 340 87.68 d.145.1.2,d.146.1.1 41749,41762 3bd1A 79 89.49