Best Alignments for TR469

To select the top models, SAM generates pairwise alignments of the target sequence and the best-scoring templates. The alignments with the best E-values are presented here.

Warning: E-values smaller than about 0.001 may be overly optimistic.

Template	Template E-value	A2M alignment	SCOP Domain(s)
2fi0A	6.0978e-02	2fi0A/TR469-2fi0A-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	a.248.1.1
1w9iA	2.1765e+01	1w9iA/TR469-1w9iA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
1w7jA	2.6364e+01	1w7jA/TR469-1w7jA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	b.34.3.1 c.37.1.9
1u3eM	2.8961e+01	1u3eM/TR469-1u3eM-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	d.4.1.3 d.285.1.1
2bkhA	3.3693e+01	2bkhA/TR469-2bkhA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
1y6uA	3.7166e+01	1y6uA/TR469-1y6uA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
2gwfB	3.7894e+01	2gwfB/TR469-2gwfB-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
2qnuA	4.1492e+01	2qnuA/TR469-2qnuA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
2v26A	4.3257e+01	2v26A/TR469-2v26A-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
1fe0A	4.4753e+01	1fe0A/TR469-1fe0A-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	d.58.17.1
2d5rB	4.6730e+01	2d5rB/TR469-2d5rB-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
2ofyA	6.3797e+01	2ofyA/TR469-2ofyA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
2akaA	6.5165e+01	2akaA/TR469-2akaA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
2z51A	6.5845e+01	2z51A/TR469-2z51A-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
2ogbA	6.7390e+01	2ogbA/TR469-2ogbA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
2cs8A	6.8739e+01	2cs8A/TR469-2cs8A-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
2j01U	6.8777e+01	2j01U/TR469-2j01U-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
1vehA	7.1848e+01	1vehA/TR469-1vehA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	d.52.8.1
1cc8A	7.6650e+01	1cc8A/TR469-1cc8A-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	d.58.17.1
1ae7A	7.7061e+01	1ae7A/TR469-1ae7A-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	a.133.1.2

Please cite: Karplus, K. and Karchin, R. and Barrett, C. and Tu, S. and Cline, M. and Diekhans, M. and Grate, L. and Casper, J. and Hughey, R. ``What is the value added by human intervention in protein structure prediction?'' Proteins: Structure Function and Genetics 45(S5):86-91,2001