Best Alignments for TR469

To select the top models, SAM generates pairwise alignments of the target sequence and the best-scoring templates. The alignments with the best E-values are presented here.

Warning: E-values smaller than about 0.001 may be overly optimistic.

Template	Template E-value	A2M alignment	SCOP Domain(s)
2fi0A	4.9899e-03	2fi0A/TR469-2fi0A-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	a.248.1.1
1e0gA	9.1530e+00	1e0gA/TR469-1e0gA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	d.7.1.1
1fe0A	1.7805e+01	1fe0A/TR469-1fe0A-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	d.58.17.1
2qnuA	1.8766e+01	2qnuA/TR469-2qnuA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
1txgA	2.8494e+01	1txgA/TR469-1txgA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	a.100.1.6 c.2.1.6
2ogbA	3.0644e+01	2ogbA/TR469-2ogbA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
2gwfB	3.6654e+01	2gwfB/TR469-2gwfB-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
1cc8A	3.6747e+01	1cc8A/TR469-1cc8A-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	d.58.17.1
2fzpA	3.7279e+01	2fzpA/TR469-2fzpA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
1w7jA	3.8161e+01	1w7jA/TR469-1w7jA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	b.34.3.1 c.37.1.9
2imfA	3.9166e+01	2imfA/TR469-2imfA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
1w9iA	4.2565e+01	1w9iA/TR469-1w9iA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
2akaA	4.4340e+01	2akaA/TR469-2akaA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
2bkhA	4.7835e+01	2bkhA/TR469-2bkhA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
2cs8A	5.8998e+01	2cs8A/TR469-2cs8A-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
2ofyA	5.9008e+01	2ofyA/TR469-2ofyA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
1ksiB	5.9681e+01	1ksiB/TR469-1ksiB-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	b.30.2.1 d.17.2.1 d.17.2.1
1jf8A	6.0990e+01	1jf8A/TR469-1jf8A-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	c.44.1.1
2czcA	6.1748e+01	2czcA/TR469-2czcA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
2rjbA	6.1933e+01	2rjbA/TR469-2rjbA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m

Please cite: Karplus, K. and Karchin, R. and Barrett, C. and Tu, S. and Cline, M. and Diekhans, M. and Grate, L. and Casper, J. and Hughey, R. ``What is the value added by human intervention in protein structure prediction?'' Proteins: Structure Function and Genetics 45(S5):86-91,2001