# TARGET TR469 # Using neural net dunbrack-40pc-3157-t2k-IDGaaH13-3-13-7-13-9-13-11-pb-seeded.net # This is a 4-layer network, with # window units # 3 13 # 7 13 # 9 13 # 11 16 (1 pb ) # The input amino acid frequencies were determined from # alignment TR469.t2k-thin90.a2m.gz # with weighted counts, using HenikoffWeight(1.3 bits/column, 1) # The weighting was determined by the posterior distribution # after regularizing with /projects/compbio/lib/recode3.20comp. # Counts were regularized to probabilities using # /projects/compbio/lib/recode3.20comp # Total sequence weight for alignment was 15.0408 # Pos AA A B C D E F G H I J K L M N O P 10N 1S 5N 5N 5N 5N 5N 5N 5N 5N 5N 5N 5N 5N 5N 5N 5N 5N 1 Q 0.071 0.074 0.217 0.339 0.002 0.026 0.005 0.014 0.005 0.001 0.045 0.054 0.109 0.001 0.012 0.024 2 K 0.019 0.065 0.329 0.321 0.004 0.073 0.010 0.001 0.007 0.002 0.006 0.018 0.075 0.001 0.001 0.069 3 F 0.044 0.033 0.255 0.368 0.010 0.103 0.009 0.008 0.001 0.001 0.046 0.016 0.096 0.002 0.003 0.005 4 T 0.002 0.083 0.025 0.080 0.009 0.678 0.006 0.005 0.003 0.001 0.013 0.032 0.055 0.002 0.001 0.003 5 K 0.009 0.043 0.011 0.073 0.002 0.042 0.003 0.009 0.001 0.001 0.685 0.026 0.083 0.001 0.004 0.008 6 D 0.016 0.198 0.120 0.075 0.001 0.027 0.005 0.003 0.019 0.002 0.013 0.406 0.074 0.002 0.006 0.033 7 M 0.029 0.013 0.479 0.190 0.001 0.011 0.004 0.001 0.001 0.001 0.024 0.015 0.202 0.001 0.005 0.024 8 T 0.001 0.002 0.014 0.006 0.001 0.863 0.001 0.001 0.001 0.001 0.004 0.020 0.089 0.001 0.001 0.001 9 F 0.001 0.002 0.001 0.002 0.001 0.003 0.001 0.001 0.001 0.001 0.919 0.007 0.066 0.001 0.001 0.001 10 A 0.001 0.010 0.001 0.004 0.001 0.001 0.001 0.001 0.001 0.001 0.003 0.804 0.177 0.001 0.001 0.001 11 Q 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.994 0.001 0.001 0.001 12 A 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.992 0.001 0.001 0.001 13 L 0.001 0.001 0.002 0.002 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.003 0.988 0.001 0.001 0.001 14 Q 0.001 0.001 0.003 0.004 0.001 0.002 0.002 0.001 0.001 0.001 0.001 0.001 0.961 0.006 0.001 0.018 15 T 0.010 0.010 0.022 0.012 0.001 0.003 0.010 0.001 0.001 0.001 0.006 0.003 0.796 0.012 0.028 0.086 16 H 0.002 0.001 0.039 0.003 0.008 0.067 0.186 0.001 0.001 0.002 0.004 0.008 0.576 0.084 0.007 0.012 17 P 0.009 0.015 0.016 0.004 0.001 0.012 0.004 0.047 0.001 0.001 0.258 0.008 0.533 0.006 0.080 0.007 18 G 0.001 0.006 0.001 0.003 0.001 0.023 0.001 0.001 0.011 0.009 0.057 0.636 0.231 0.002 0.003 0.014 19 V 0.007 0.002 0.004 0.002 0.001 0.004 0.002 0.001 0.001 0.001 0.067 0.069 0.835 0.001 0.001 0.003 20 A 0.001 0.002 0.009 0.002 0.001 0.002 0.001 0.001 0.001 0.001 0.015 0.100 0.866 0.001 0.001 0.001 21 G 0.001 0.001 0.001 0.002 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.011 0.981 0.001 0.001 0.001 22 V 0.001 0.001 0.001 0.002 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.002 0.993 0.001 0.001 0.001 23 L 0.001 0.001 0.002 0.002 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.991 0.001 0.001 0.001 24 R 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.992 0.001 0.001 0.002 25 S 0.001 0.001 0.001 0.001 0.005 0.001 0.018 0.001 0.001 0.001 0.001 0.001 0.069 0.902 0.001 0.002 26 Y 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.011 0.001 0.001 0.001 0.001 0.039 0.002 0.940 0.002 27 N 0.002 0.004 0.007 0.001 0.006 0.002 0.027 0.001 0.028 0.060 0.002 0.008 0.074 0.189 0.005 0.585 28 L 0.742 0.002 0.021 0.005 0.001 0.002 0.009 0.016 0.001 0.001 0.009 0.002 0.055 0.008 0.121 0.005 29 G 0.006 0.075 0.352 0.026 0.004 0.040 0.023 0.006 0.032 0.025 0.010 0.019 0.113 0.004 0.020 0.245 30 C 0.094 0.016 0.037 0.052 0.285 0.079 0.131 0.008 0.004 0.011 0.057 0.019 0.064 0.129 0.002 0.011 31 I 0.013 0.098 0.124 0.111 0.021 0.024 0.025 0.273 0.006 0.003 0.065 0.035 0.041 0.005 0.152 0.004 32 G 0.009 0.063 0.053 0.160 0.007 0.034 0.017 0.010 0.129 0.146 0.018 0.038 0.068 0.002 0.007 0.240 33 C 0.315 0.011 0.057 0.045 0.055 0.168 0.028 0.009 0.009 0.017 0.069 0.062 0.118 0.022 0.004 0.011 34 M 0.017 0.094 0.080 0.048 0.009 0.037 0.008 0.053 0.003 0.003 0.414 0.092 0.094 0.007 0.035 0.006 35 G 0.010 0.109 0.033 0.079 0.007 0.047 0.007 0.011 0.036 0.021 0.031 0.405 0.142 0.003 0.011 0.050 36 A 0.046 0.009 0.098 0.042 0.025 0.067 0.063 0.004 0.003 0.006 0.103 0.064 0.415 0.025 0.006 0.025 37 Q 0.013 0.072 0.071 0.032 0.002 0.071 0.006 0.038 0.002 0.002 0.099 0.109 0.430 0.002 0.036 0.015 38 N 0.009 0.049 0.044 0.046 0.003 0.053 0.010 0.002 0.026 0.010 0.088 0.147 0.438 0.004 0.002 0.071 39 E 0.034 0.027 0.129 0.057 0.001 0.011 0.003 0.002 0.001 0.001 0.054 0.114 0.553 0.001 0.003 0.010 40 S 0.001 0.002 0.006 0.003 0.001 0.360 0.001 0.001 0.001 0.001 0.011 0.061 0.552 0.001 0.001 0.002 41 L 0.001 0.002 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.636 0.014 0.345 0.001 0.001 0.001 42 E 0.001 0.003 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.002 0.518 0.470 0.003 0.001 0.001 43 Q 0.001 0.001 0.002 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.002 0.988 0.001 0.003 0.003 44 G 0.001 0.001 0.003 0.001 0.001 0.001 0.002 0.001 0.001 0.001 0.001 0.003 0.960 0.003 0.001 0.026 45 A 0.003 0.001 0.008 0.002 0.001 0.001 0.006 0.001 0.001 0.001 0.002 0.001 0.966 0.005 0.003 0.003 46 N 0.001 0.008 0.012 0.003 0.003 0.008 0.005 0.001 0.001 0.001 0.003 0.011 0.881 0.019 0.010 0.033 47 A 0.001 0.001 0.001 0.001 0.013 0.001 0.033 0.001 0.001 0.001 0.002 0.001 0.009 0.937 0.001 0.002 48 H 0.001 0.001 0.004 0.001 0.001 0.001 0.001 0.028 0.001 0.001 0.001 0.001 0.010 0.001 0.948 0.003 49 G 0.002 0.002 0.007 0.001 0.001 0.001 0.001 0.001 0.019 0.005 0.001 0.001 0.003 0.001 0.001 0.958 50 L 0.773 0.004 0.195 0.022 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.002 51 N 0.001 0.001 0.001 0.001 0.001 0.999 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 52 V 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.999 0.001 0.001 0.001 0.001 0.001 53 E 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.998 0.001 0.001 0.001 0.001 54 D 0.001 0.001 0.006 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.015 0.965 0.001 0.001 0.009 55 I 0.001 0.001 0.002 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.992 0.001 0.001 0.002 56 L 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.003 0.009 0.984 0.001 0.001 0.001 57 R 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.996 0.001 0.001 0.001 58 D 0.001 0.001 0.001 0.001 0.001 0.001 0.002 0.001 0.001 0.001 0.001 0.003 0.949 0.006 0.001 0.032 59 L 0.002 0.001 0.022 0.002 0.001 0.001 0.013 0.001 0.001 0.001 0.002 0.002 0.918 0.017 0.012 0.008 60 N 0.001 0.002 0.015 0.003 0.001 0.010 0.011 0.001 0.001 0.001 0.002 0.004 0.923 0.011 0.007 0.008 61 A 0.006 0.020 0.008 0.009 0.001 0.008 0.008 0.003 0.001 0.001 0.043 0.009 0.791 0.027 0.016 0.048 62 L 0.010 0.023 0.033 0.015 0.010 0.016 0.098 0.004 0.004 0.002 0.026 0.083 0.357 0.232 0.036 0.051 63 A 0.011 0.019 0.113 0.020 0.006 0.013 0.103 0.013 0.002 0.001 0.027 0.014 0.427 0.036 0.158 0.035