# TARGET TR469 # Using neural net dunbrack-40pc-3157-t2k-IDGaaH13-3-13-7-13-9-13-11-o_sep-seeded.net # This is a 4-layer network, with # window units # 3 13 # 7 13 # 9 13 # 11 20 (1 o_sep ) # The input amino acid frequencies were determined from # alignment TR469.t2k-thin90.a2m.gz # with weighted counts, using HenikoffWeight(1.3 bits/column, 1) # The weighting was determined by the posterior distribution # after regularizing with /projects/compbio/lib/recode3.20comp. # Counts were regularized to probabilities using # /projects/compbio/lib/recode3.20comp # Total sequence weight for alignment was 15.0408 # Pos AA G H I J K L M N P Q R S T U V W A B C D 10N 1S 5N 5N 5N 5N 5N 5N 5N 5N 5N 5N 5N 5N 5N 5N 5N 5N 5N 5N 5N 5N 1 Q 0.007 0.010 0.001 0.001 0.001 0.001 0.001 0.001 0.004 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.135 0.036 0.172 0.627 2 K 0.017 0.021 0.007 0.001 0.005 0.005 0.003 0.002 0.003 0.003 0.003 0.001 0.001 0.001 0.001 0.001 0.211 0.039 0.117 0.557 3 F 0.016 0.034 0.010 0.001 0.004 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.002 0.001 0.001 0.001 0.097 0.047 0.154 0.628 4 T 0.457 0.091 0.004 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.002 0.001 0.001 0.049 0.170 0.033 0.189 5 K 0.122 0.241 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.027 0.125 0.085 0.398 6 D 0.021 0.376 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.051 0.050 0.059 0.441 7 M 0.011 0.496 0.004 0.001 0.001 0.001 0.001 0.001 0.005 0.002 0.001 0.001 0.001 0.001 0.001 0.001 0.130 0.044 0.057 0.249 8 T 0.015 0.881 0.002 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.015 0.028 0.009 0.046 9 F 0.016 0.951 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.005 0.011 0.004 0.012 10 A 0.025 0.757 0.002 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.019 0.128 0.013 0.053 11 Q 0.036 0.245 0.018 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.046 0.578 0.017 0.055 12 A 0.117 0.266 0.047 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.059 0.322 0.050 0.134 13 L 0.271 0.094 0.009 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.055 0.079 0.094 0.394 14 Q 0.010 0.047 0.010 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.046 0.034 0.082 0.767 15 T 0.009 0.076 0.007 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.034 0.030 0.120 0.722 16 H 0.213 0.465 0.005 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.010 0.107 0.038 0.161 17 P 0.036 0.441 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.008 0.050 0.073 0.390 18 G 0.031 0.692 0.002 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.020 0.036 0.020 0.197 19 V 0.026 0.898 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.005 0.018 0.010 0.041 20 A 0.040 0.791 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.011 0.079 0.016 0.060 21 G 0.026 0.624 0.004 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.017 0.240 0.017 0.068 22 V 0.034 0.398 0.025 0.001 0.001 0.002 0.002 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.030 0.377 0.033 0.095 23 L 0.059 0.145 0.191 0.001 0.005 0.002 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.058 0.354 0.055 0.124 24 R 0.372 0.077 0.015 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.057 0.073 0.060 0.342 25 S 0.045 0.016 0.004 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.025 0.039 0.082 0.787 26 Y 0.020 0.017 0.004 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.088 0.034 0.137 0.697 27 N 0.060 0.040 0.004 0.001 0.002 0.002 0.001 0.001 0.003 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.116 0.067 0.124 0.576 28 L 0.025 0.016 0.005 0.001 0.002 0.001 0.001 0.001 0.006 0.003 0.002 0.001 0.001 0.001 0.001 0.001 0.055 0.049 0.121 0.713 29 G 0.111 0.019 0.002 0.001 0.002 0.001 0.001 0.001 0.002 0.002 0.003 0.001 0.004 0.002 0.001 0.001 0.250 0.060 0.084 0.454 30 C 0.138 0.013 0.001 0.001 0.001 0.004 0.003 0.003 0.001 0.001 0.002 0.001 0.007 0.005 0.003 0.002 0.078 0.078 0.100 0.558 31 I 0.011 0.010 0.002 0.001 0.004 0.003 0.003 0.003 0.001 0.001 0.001 0.001 0.002 0.002 0.003 0.003 0.176 0.031 0.145 0.598 32 G 0.017 0.029 0.003 0.001 0.002 0.001 0.001 0.002 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.160 0.022 0.108 0.651 33 C 0.247 0.094 0.005 0.001 0.003 0.002 0.001 0.002 0.003 0.002 0.002 0.001 0.001 0.001 0.001 0.001 0.070 0.090 0.094 0.379 34 M 0.244 0.123 0.002 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.040 0.127 0.079 0.378 35 G 0.080 0.107 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.058 0.057 0.080 0.613 36 A 0.051 0.124 0.003 0.001 0.001 0.001 0.001 0.001 0.002 0.002 0.003 0.001 0.001 0.001 0.001 0.001 0.059 0.206 0.080 0.462 37 Q 0.023 0.491 0.002 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.020 0.125 0.067 0.267 38 N 0.026 0.821 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.005 0.040 0.022 0.084 39 E 0.005 0.793 0.002 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.006 0.117 0.016 0.059 40 S 0.002 0.954 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.002 0.023 0.004 0.013 41 L 0.009 0.965 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.017 0.002 0.005 42 E 0.006 0.455 0.003 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.002 0.507 0.006 0.022 43 Q 0.014 0.889 0.002 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.068 0.006 0.020 44 G 0.041 0.717 0.023 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.005 0.138 0.024 0.051 45 A 0.079 0.122 0.185 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.011 0.423 0.037 0.139 46 N 0.576 0.033 0.002 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.005 0.024 0.036 0.323 47 A 0.063 0.011 0.002 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.011 0.046 0.090 0.776 48 H 0.012 0.009 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.039 0.035 0.172 0.731 49 G 0.005 0.018 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.023 0.011 0.088 0.854 50 L 0.005 0.065 0.002 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.031 0.011 0.117 0.768 51 N 0.044 0.926 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.002 0.007 0.003 0.017 52 V 0.004 0.989 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.004 0.001 0.002 53 E 0.002 0.960 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.032 0.001 0.005 54 D 0.002 0.978 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.016 0.001 0.003 55 I 0.004 0.975 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.017 0.001 0.002 56 L 0.009 0.701 0.004 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.273 0.003 0.009 57 R 0.033 0.881 0.002 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.043 0.005 0.035 58 D 0.022 0.734 0.029 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.003 0.102 0.023 0.086 59 L 0.098 0.434 0.085 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.003 0.206 0.036 0.137 60 N 0.242 0.107 0.016 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.004 0.123 0.077 0.431 61 A 0.083 0.024 0.002 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.002 0.023 0.063 0.804 62 L 0.054 0.021 0.003 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.011 0.029 0.106 0.776 63 A 0.033 0.028 0.002 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.013 0.036 0.134 0.753