# TARGET TR469 # Using neural net dunbrack-40pc-3157-t2k-IDGaaH13-3-13-7-13-9-13-11-bys-seeded.net # This is a 4-layer network, with # window units # 3 13 # 7 13 # 9 13 # 11 11 (1 Bystroff ) # The input amino acid frequencies were determined from # alignment TR469.t2k-thin90.a2m.gz # with weighted counts, using HenikoffWeight(1.3 bits/column, 1) # The weighting was determined by the posterior distribution # after regularizing with /projects/compbio/lib/recode3.20comp. # Counts were regularized to probabilities using # /projects/compbio/lib/recode3.20comp # Total sequence weight for alignment was 15.0408 # Pos AA H E P G Y N L T D S C 10N 1S 5N 5N 5N 5N 5N 5N 5N 5N 5N 5N 5N 1 Q 0.156 0.411 0.213 0.071 0.076 0.024 0.018 0.003 0.026 0.002 0.001 2 K 0.081 0.424 0.334 0.035 0.043 0.051 0.008 0.001 0.020 0.001 0.002 3 F 0.075 0.458 0.313 0.032 0.033 0.061 0.003 0.001 0.022 0.001 0.001 4 T 0.082 0.249 0.446 0.028 0.051 0.077 0.009 0.001 0.053 0.003 0.001 5 K 0.787 0.022 0.093 0.045 0.018 0.013 0.008 0.001 0.005 0.004 0.002 6 D 0.497 0.032 0.048 0.307 0.025 0.021 0.055 0.007 0.006 0.002 0.001 7 M 0.458 0.140 0.140 0.112 0.048 0.024 0.040 0.013 0.021 0.004 0.001 8 T 0.459 0.225 0.191 0.050 0.018 0.042 0.007 0.001 0.008 0.001 0.001 9 F 0.832 0.098 0.031 0.017 0.009 0.007 0.001 0.001 0.004 0.001 0.001 10 A 0.935 0.022 0.016 0.011 0.010 0.002 0.001 0.001 0.002 0.001 0.001 11 Q 0.934 0.015 0.010 0.027 0.008 0.002 0.002 0.001 0.002 0.001 0.001 12 A 0.920 0.026 0.017 0.021 0.007 0.003 0.001 0.001 0.004 0.001 0.001 13 L 0.894 0.039 0.020 0.035 0.003 0.003 0.001 0.001 0.003 0.001 0.001 14 Q 0.797 0.030 0.036 0.083 0.018 0.012 0.012 0.001 0.010 0.001 0.001 15 T 0.473 0.039 0.081 0.366 0.008 0.013 0.012 0.001 0.006 0.001 0.001 16 H 0.063 0.114 0.233 0.023 0.025 0.022 0.022 0.001 0.486 0.010 0.001 17 P 0.720 0.001 0.229 0.016 0.001 0.004 0.002 0.001 0.001 0.001 0.026 18 G 0.527 0.002 0.021 0.097 0.013 0.014 0.031 0.259 0.001 0.036 0.001 19 V 0.808 0.051 0.064 0.055 0.005 0.012 0.001 0.001 0.005 0.001 0.001 20 A 0.890 0.029 0.043 0.025 0.005 0.003 0.002 0.001 0.003 0.001 0.001 21 G 0.939 0.008 0.010 0.008 0.018 0.004 0.008 0.003 0.001 0.003 0.001 22 V 0.946 0.033 0.006 0.010 0.004 0.001 0.001 0.001 0.002 0.001 0.001 23 L 0.924 0.019 0.013 0.014 0.018 0.002 0.001 0.001 0.009 0.001 0.001 24 R 0.928 0.017 0.012 0.034 0.004 0.002 0.001 0.001 0.003 0.001 0.001 25 S 0.865 0.015 0.018 0.071 0.011 0.005 0.006 0.001 0.008 0.001 0.001 26 Y 0.188 0.013 0.034 0.732 0.004 0.003 0.018 0.001 0.004 0.001 0.001 27 N 0.066 0.009 0.041 0.046 0.021 0.011 0.581 0.168 0.006 0.050 0.001 28 L 0.199 0.195 0.303 0.203 0.026 0.031 0.026 0.003 0.012 0.002 0.001 29 G 0.162 0.093 0.197 0.124 0.108 0.048 0.059 0.085 0.017 0.107 0.001 30 C 0.221 0.214 0.259 0.125 0.072 0.060 0.012 0.002 0.030 0.004 0.002 31 I 0.265 0.272 0.214 0.148 0.039 0.018 0.014 0.002 0.026 0.002 0.002 32 G 0.120 0.053 0.117 0.074 0.207 0.025 0.055 0.140 0.012 0.196 0.001 33 C 0.124 0.205 0.367 0.048 0.105 0.040 0.015 0.004 0.076 0.015 0.001 34 M 0.510 0.036 0.352 0.059 0.009 0.016 0.004 0.001 0.006 0.002 0.006 35 G 0.502 0.033 0.098 0.105 0.072 0.026 0.043 0.063 0.008 0.050 0.001 36 A 0.542 0.063 0.134 0.139 0.057 0.024 0.016 0.005 0.013 0.006 0.001 37 Q 0.580 0.068 0.105 0.199 0.012 0.013 0.011 0.001 0.008 0.001 0.001 38 N 0.532 0.064 0.126 0.097 0.045 0.031 0.066 0.011 0.017 0.010 0.001 39 E 0.736 0.050 0.112 0.061 0.016 0.011 0.005 0.001 0.006 0.001 0.001 40 S 0.592 0.070 0.171 0.073 0.019 0.048 0.005 0.001 0.020 0.001 0.001 41 L 0.960 0.006 0.020 0.008 0.001 0.002 0.001 0.001 0.001 0.001 0.001 42 E 0.979 0.003 0.005 0.010 0.001 0.001 0.001 0.001 0.001 0.001 0.001 43 Q 0.915 0.013 0.008 0.055 0.003 0.002 0.003 0.001 0.002 0.001 0.001 44 G 0.921 0.024 0.011 0.016 0.016 0.002 0.004 0.001 0.006 0.001 0.001 45 A 0.917 0.035 0.018 0.019 0.005 0.003 0.001 0.001 0.002 0.001 0.001 46 N 0.893 0.029 0.027 0.031 0.008 0.006 0.001 0.001 0.004 0.001 0.001 47 A 0.911 0.016 0.015 0.040 0.005 0.003 0.001 0.001 0.008 0.001 0.001 48 H 0.118 0.006 0.020 0.801 0.002 0.002 0.047 0.001 0.003 0.001 0.001 49 G 0.010 0.001 0.011 0.008 0.008 0.003 0.304 0.605 0.001 0.048 0.001 50 L 0.110 0.257 0.492 0.078 0.015 0.033 0.005 0.001 0.006 0.002 0.001 51 N 0.012 0.037 0.563 0.020 0.020 0.252 0.015 0.001 0.067 0.014 0.001 52 V 0.973 0.001 0.017 0.004 0.001 0.002 0.001 0.001 0.001 0.001 0.002 53 E 0.994 0.001 0.001 0.004 0.001 0.001 0.001 0.001 0.001 0.001 0.001 54 D 0.980 0.001 0.001 0.017 0.001 0.001 0.001 0.001 0.001 0.001 0.001 55 I 0.991 0.003 0.001 0.004 0.001 0.001 0.001 0.001 0.001 0.001 0.001 56 L 0.999 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 57 R 0.998 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 58 D 0.966 0.001 0.001 0.033 0.001 0.001 0.001 0.001 0.001 0.001 0.001 59 L 0.937 0.001 0.003 0.056 0.001 0.001 0.001 0.001 0.001 0.001 0.001 60 N 0.911 0.002 0.004 0.061 0.001 0.001 0.019 0.001 0.001 0.001 0.001 61 A 0.884 0.004 0.007 0.080 0.003 0.003 0.017 0.001 0.001 0.001 0.001 62 L 0.756 0.023 0.036 0.162 0.004 0.009 0.005 0.001 0.005 0.001 0.001 63 A 0.723 0.043 0.080 0.095 0.012 0.014 0.019 0.001 0.013 0.001 0.001