# List of top-scoring protein chains for t2k-w0.5-1-str4-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2fi0A	81	0.01884	a.248.1.1	133507
1e0gA	48	3.577	d.7.1.1	37325
1txgA	335	5.791	a.100.1.6,c.2.1.6	112775,112776
1w7jA	795	12.68	b.34.3.1,c.37.1.9	120688,120689
2bkhA	814	17.94		
2akaA	776	18.68		
1dlwA	116	21.25	a.1.1.1	14982
1w9iA	770	22.40		
1ksiB	642	25.30	b.30.2.1,d.17.2.1,d.17.2.1	24409,38045,38046
1ui8A	638	27.53	b.30.2.1,d.17.2.1,d.17.2.1	99419,99420,99421
2imfA	203	31.15		
1mvwA	840	33.90	i.15.1.1	79523
1yaaA	412	36.80	c.67.1.1	34280
2qnuA	226	37.64		
1pczA	191	39.47	d.129.1.1,d.129.1.1	41292,41293
1fe0A	68	41.07	d.58.17.1	39345
2ezkA	99	44.61	a.4.1.2	16027
2vl6A	268	46.82		
2gu1A	361	47.42		
2jucA	59	48.27		
1x9fB	145	51.31	a.1.1.2	114984
1jf8A	131	51.63	c.44.1.1	66621
1br2A	791	53.73	b.34.3.1,c.37.1.9	24558,32155
2fzpA	144	56.18		
1kvoA	124	56.84	a.133.1.2	19564
1x9fA	151	57.01	a.1.1.2	114983
1cg5A	141	57.54	a.1.1.2	15406
2ofyA	86	58.11		
1zc0A	309	62.30		
1sw2A	275	69.32	c.94.1.1	106064
1yzxA	226	69.63		
1jl3A	139	72.29	c.44.1.1	66826
1lvk	762	72.63		
2v26A	784	73.61		
1cc8A	73	73.66	d.58.17.1	39343
1d0yA	761	74.74	b.34.3.1,c.37.1.9	24581,32178
1otgA	125	74.89	d.80.1.2	39831
2g9zA	348	75.64		
2oqeA	660	76.89	b.30.2.1,d.17.2.1,d.17.2.1	139222,139223,139224
1a4fA	141	77.91	a.1.1.2	15394
1wdvA	152	79.14	d.116.1.1	114539
3c85A	183	79.17		
2ewtA	71	79.17		
1vjoA	393	81.17	c.67.1.3	100827
2ogbA	126	82.37		
1hdsA	141	82.58	a.1.1.2	15378
2d2mB	142	82.88		
2h26A	291	84.44	b.1.1.2,d.19.1.1	135990,135991
1woyA	500	84.72	a.27.1.1,c.26.1.1	121130,121131
1o13A	136	85.10	c.55.5.1	80762
2phcB	225	85.79		
2aorA	223	86.87		
1zz1A	369	87.17		
2ho1A	252	87.72