# List of top-scoring protein chains for t2k-w0.5-1-str2-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2fi0A	81	0.008994	a.248.1.1	133507
1e0gA	48	3.106	d.7.1.1	37325
1txgA	335	7.066	a.100.1.6,c.2.1.6	112775,112776
2qnuA	226	9.369		
1w7jA	795	9.889	b.34.3.1,c.37.1.9	120688,120689
2akaA	776	10.22		
1w9iA	770	10.50		
2bkhA	814	12.82		
2fzpA	144	13.28		
1mvwA	840	15.67	i.15.1.1	79523
2aorA	223	17.74		
2ogbA	126	19.59		
1kvoA	124	20.79	a.133.1.2	19564
1dlwA	116	21.00	a.1.1.1	14982
2gwfB	134	22.76		
2jucA	59	23.02		
1pczA	191	23.56	d.129.1.1,d.129.1.1	41292,41293
2imfA	203	25.75		
2vl6A	268	28.65		
1ksiB	642	29.19	b.30.2.1,d.17.2.1,d.17.2.1	24409,38045,38046
1ui8A	638	33.00	b.30.2.1,d.17.2.1,d.17.2.1	99419,99420,99421
1jf8A	131	34.43	c.44.1.1	66621
1y75A	118	35.07		
1aokA	122	35.33	a.133.1.2	19560
2h26A	291	37.21	b.1.1.2,d.19.1.1	135990,135991
1y75B	118	37.58		
1br2A	791	37.70	b.34.3.1,c.37.1.9	24558,32155
1lvk	762	41.37		
1fe0A	68	41.63	d.58.17.1	39345
1d0yA	761	44.69	b.34.3.1,c.37.1.9	24581,32178
1aokB	122	45.22	a.133.1.2	19561
2ofyA	86	46.07		
1ae7A	119	48.72	a.133.1.2	19553
1hn4A	131	50.42	a.133.1.2	65893
2pl2A	217	51.31		
1jl3A	139	54.27	c.44.1.1	66826
2ho1A	252	54.99		
1xnfA	275	56.19	a.118.8.1	115580
2v26A	784	56.39		
2ezkA	99	57.65	a.4.1.2	16027
2vgxA	148	59.69		
2j00I	128	60.48	d.14.1.1	137847
1x9fB	145	60.71	a.1.1.2	114984
2qywA	102	60.74		
1y6uA	70	61.79		
1vjoA	393	64.46	c.67.1.3	100827
1zz1A	369	65.69		
2j01U	118	69.41		
1q48A	134	70.15	d.224.1.2	95783
1y4lA	121	71.78	a.133.1.2	122624
1zlbA	122	72.06	a.133.1.2	125248
1xxsA	122	72.64		
1na3A	91	72.72	k.38.1.1	85481
1g4iA	123	72.98	a.133.1.2	60241
1yzxA	226	73.00		
2hr0A	645	74.39		
2d2mB	142	75.63		
1o13A	136	76.45	c.55.5.1	80762
1n28A	124	77.71	a.133.1.2	91550
1x9fA	151	78.38	a.1.1.2	114983
2rn7A	108	78.65		
1s6bA	119	80.92	a.133.1.2	98592
2vq2A	225	82.29		
2g58A	121	82.65	a.133.1.2	134645
1mc2A	122	83.50	a.133.1.2	74622
2fbnA	198	84.86	a.118.8.1	133254
2eklA	313	85.08		
2oqeA	660	85.98	b.30.2.1,d.17.2.1,d.17.2.1	139222,139223,139224
2gu1A	361	86.32		
1jgsA	138	86.67	a.4.5.28	66683
1cc8A	73	88.92	d.58.17.1	39343