# List of top-scoring protein chains for t2k-w0.5-1-pb-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2fi0A 81 0.001653 a.248.1.1 133507 1e0gA 48 1.066 d.7.1.1 37325 2imfA 203 4.487 1txgA 335 5.490 a.100.1.6,c.2.1.6 112775,112776 2akaA 776 6.818 1w9iA 770 7.008 1w7jA 795 8.833 b.34.3.1,c.37.1.9 120688,120689 1ksiB 642 9.122 b.30.2.1,d.17.2.1,d.17.2.1 24409,38045,38046 1dlwA 116 10.05 a.1.1.1 14982 2bkhA 814 10.08 1ui8A 638 13.29 b.30.2.1,d.17.2.1,d.17.2.1 99419,99420,99421 1mvwA 840 18.52 i.15.1.1 79523 1yzxA 226 19.56 2aorA 223 21.52 1pczA 191 22.09 d.129.1.1,d.129.1.1 41292,41293 2ewtA 71 22.30 1d0yA 761 22.77 b.34.3.1,c.37.1.9 24581,32178 1wdvA 152 23.09 d.116.1.1 114539 1lvk 762 24.17 2vl6A 268 24.54 1y0pA 571 24.55 a.138.1.3,c.3.1.4,d.168.1.1 122507,122508,122509 1x9fB 145 26.25 a.1.1.2 114984 1br2A 791 29.66 b.34.3.1,c.37.1.9 24558,32155 2v26A 784 30.46 1yaaA 412 31.13 c.67.1.1 34280 2gu1A 361 32.35 2ofyA 86 33.83 1jf8A 131 34.41 c.44.1.1 66621 2j01U 118 35.72 2z2mA 168 37.18 1lmb3 92 38.38 1vjoA 393 38.83 c.67.1.3 100827 1u55A 188 39.37 d.278.1.1 107677 2rn7A 108 39.37 2fzpA 144 41.95 2phcB 225 42.09 2jucA 59 42.10 1qo8A 566 42.47 a.138.1.3,c.3.1.4,d.168.1.1 19696,30433,42316 1y6uA 70 43.24 1v5vA 401 43.70 b.44.2.1,d.250.1.1 113539,113540 2gwdA 449 46.02 1lehA 364 46.91 c.2.1.7,c.58.1.1 30268,33916 2amxA 376 47.39 c.1.9.1 127024 2ghjA 118 47.81 1dbxA 158 48.17 d.116.1.1 40928 1u3eM 174 48.33 d.4.1.3,d.285.1.1 107640,107641 2h56A 233 48.98 1jl3A 139 49.35 c.44.1.1 66826 2oqeA 660 51.29 b.30.2.1,d.17.2.1,d.17.2.1 139222,139223,139224 1lliA 92 51.40 a.35.1.2 17025 1ksiA 642 53.24 b.30.2.1,d.17.2.1,d.17.2.1 24408,38043,38044 2pgfA 371 54.00 2d2mB 142 58.51 1lkxA 697 62.53 c.37.1.9 73981 1z67A 135 63.36 a.259.1.1 124507 1vflA 356 64.83 c.1.9.1 120041 2bnmA 198 65.86 a.35.1.3,b.82.1.10 128835,128836 2ogbA 126 66.59 2pajA 492 67.89 1etxA 98 68.19 a.4.1.12 18978 1nnlA 225 68.72 c.108.1.4 85906 1sw2A 275 68.79 c.94.1.1 106064 2al3A 90 69.19 d.15.1.2 126957 1adrA 76 69.97 a.35.1.2 17042 1frvA 264 71.49 e.19.1.1 43308 2g9zA 348 75.45 1e3dA 266 77.13 e.19.1.1 59188 1nfpA 228 77.74 c.1.16.2 29555 2r1jL 68 79.14 2gwfB 134 80.54 2ezkA 99 81.63 a.4.1.2 16027 1xfjA 261 85.53 d.194.1.2 109585 2dkoB 103 87.93 1knwA 425 88.30 b.49.2.3,c.1.6.1 90969,90970 1q9jA 422 88.36 c.43.1.2,c.43.1.2 104590,104591 1k6kA 143 88.42 a.174.1.1 77274