# List of top-scoring protein chains for t2k-w0.5-1-o_sep-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2fi0A	81	0.06835	a.248.1.1	133507
1txgA	335	7.487	a.100.1.6,c.2.1.6	112775,112776
1e0gA	48	12.79	d.7.1.1	37325
2akaA	776	21.82		
2qnuA	226	22.87		
1jf8A	131	25.09	c.44.1.1	66621
1w7jA	795	27.48	b.34.3.1,c.37.1.9	120688,120689
1w9iA	770	32.03		
2ezkA	99	32.39	a.4.1.2	16027
2bkhA	814	33.25		
1cc8A	73	33.62	d.58.17.1	39343
1ksiB	642	34.05	b.30.2.1,d.17.2.1,d.17.2.1	24409,38045,38046
1jl3A	139	34.33	c.44.1.1	66826
2fzpA	144	35.80		
1fe0A	68	37.20	d.58.17.1	39345
1yaaA	412	38.74	c.67.1.1	34280
1x9fA	151	42.17	a.1.1.2	114983
1dlwA	116	47.16	a.1.1.1	14982
2gwfB	134	48.22		
2ogbA	126	48.34		
2imfA	203	59.56		
2jucA	59	60.13		
1pczA	191	65.01	d.129.1.1,d.129.1.1	41292,41293
1zz1A	369	66.67		
1x9fB	145	69.69	a.1.1.2	114984
2vl6A	268	70.50		
1lvk	762	76.10		
2ofyA	86	77.07		
1z67A	135	77.45	a.259.1.1	124507
1o13A	136	77.75	c.55.5.1	80762
2pl2A	217	78.06		
1yzxA	226	79.36		
1d0yA	761	80.99	b.34.3.1,c.37.1.9	24581,32178
2d2mB	142	81.00		
1br2A	791	83.81	b.34.3.1,c.37.1.9	24558,32155
2aorA	223	87.48		
2b5aA	77	89.44	a.35.1.3	127882