# List of top-scoring protein chains for t2k-w0.5-1-o_notor-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2fi0A	81	0.05959	a.248.1.1	133507
1txgA	335	10.16	a.100.1.6,c.2.1.6	112775,112776
1e0gA	48	11.03	d.7.1.1	37325
2qnuA	226	17.46		
2akaA	776	17.91		
1fe0A	68	23.61	d.58.17.1	39345
1cc8A	73	25.55	d.58.17.1	39343
1w9iA	770	26.56		
1w7jA	795	26.69	b.34.3.1,c.37.1.9	120688,120689
2bkhA	814	27.87		
1jf8A	131	30.85	c.44.1.1	66621
2ezkA	99	33.79	a.4.1.2	16027
1ksiB	642	34.42	b.30.2.1,d.17.2.1,d.17.2.1	24409,38045,38046
1jl3A	139	35.95	c.44.1.1	66826
2jucA	59	39.97		
2fzpA	144	40.31		
1yaaA	412	40.42	c.67.1.1	34280
1dlwA	116	43.65	a.1.1.1	14982
1x9fA	151	51.02	a.1.1.2	114983
2ogbA	126	54.52		
2gwfB	134	60.27		
1lvk	762	64.97		
1d0yA	761	68.31	b.34.3.1,c.37.1.9	24581,32178
2ofyA	86	69.66		
1y6uA	70	69.77		
3c85A	183	70.03		
1zz1A	369	70.07		
2pl2A	217	70.90		
2imfA	203	71.21		
2aorA	223	72.01		
1br2A	791	75.25	b.34.3.1,c.37.1.9	24558,32155
1mvwA	840	75.27	i.15.1.1	79523
1z67A	135	79.67	a.259.1.1	124507
2vl6A	268	80.02		
1pczA	191	81.18	d.129.1.1,d.129.1.1	41292,41293
1otgA	125	83.92	d.80.1.2	39831
1cg5A	141	84.35	a.1.1.2	15406
1o13A	136	84.45	c.55.5.1	80762
1zoqC	47	85.18	a.153.1.1	125453
1x9fB	145	87.27	a.1.1.2	114984