# List of top-scoring protein chains for t2k-w0.5-1-near-backbone-11-0.3-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2fi0A	81	0.01471	a.248.1.1	133507
1e0gA	48	4.690	d.7.1.1	37325
1w7jA	795	10.67	b.34.3.1,c.37.1.9	120688,120689
2akaA	776	14.52		
1w9iA	770	15.23		
2bkhA	814	16.13		
1fe0A	68	22.98	d.58.17.1	39345
1yaaA	412	26.86	c.67.1.1	34280
2qnuA	226	28.50		
2imfA	203	30.15		
1ksiB	642	31.13	b.30.2.1,d.17.2.1,d.17.2.1	24409,38045,38046
1mvwA	840	36.02	i.15.1.1	79523
1jf8A	131	37.77	c.44.1.1	66621
2j01U	118	38.47		
1jl3A	139	39.21	c.44.1.1	66826
2ewtA	71	42.86		
2ofyA	86	45.61		
1txgA	335	48.21	a.100.1.6,c.2.1.6	112775,112776
2d2mB	142	49.27		
2ezkA	99	53.48	a.4.1.2	16027
1d0yA	761	53.80	b.34.3.1,c.37.1.9	24581,32178
1dlwA	116	55.30	a.1.1.1	14982
1etxA	98	57.19	a.4.1.12	18978
2v26A	784	59.58		
1hdsA	141	69.68	a.1.1.2	15378
1lvk	762	70.45		
1br2A	791	70.92	b.34.3.1,c.37.1.9	24558,32155
1y6uA	70	72.41		
2phcB	225	72.65		
3c85A	183	76.31		
1huxA	270	78.04	c.55.1.5	61278
2aa1A	144	78.18	a.1.1.2	126463
1k6kA	143	86.28	a.174.1.1	77274